PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001070G0420
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 330aa    MW: 36178.5 Da    PI: 6.6886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001070G0420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY711.7e-22136197259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dgy+WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++ Y++eH+++
  PH01001070G0420 136 EDGYQWRKYGEKKIHGTHFTRSYFRCTYKddkGCQARKQIQQEdNNDPPMFQVRYNNEHTCN 197
                      8***************************99999*******9862579*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-22127197IPR003657WRKY domain
SuperFamilySSF1182903.27E-21128198IPR003657WRKY domain
SMARTSM007741.7E-31135198IPR003657WRKY domain
PROSITE profilePS5081117.454136199IPR003657WRKY domain
PfamPF031067.1E-24136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADCPPDRDG AVREVAQVYE LIKAHQPLLL LVHANEQSPS LSATTLLAQN LLNEALRALN  60
VALSVMKQQQ AAAAAAVPAS NLKAEPQVLS SSSPADSSGS PAADCKQVSM MRRAAKRRRT  120
EEDKYSWVIM TAVPHEDGYQ WRKYGEKKIH GTHFTRSYFR CTYKDDKGCQ ARKQIQQEDN  180
NDPPMFQVRY NNEHTCNCTS TRAAAKNNLA LQVCCNSAAG INYPNGPADH ANSRMVKQEP  240
RAALPPVAAE VVTPCQEPFP ISNSHCGTSP YDVGIPPTAS TNTSAVSCDE LEHHHLGQTT  300
AMDHEPALGD DPFFNDPHLL LLYDSFKYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-12136196968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001070G0420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932490.0FP093249.1 Phyllostachys edulis cDNA clone: bphyem202p07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619940.17e-82probable WRKY transcription factor 69 isoform X1
TrEMBLA0A0E0MBR15e-82A0A0E0MBR1_ORYPU; Uncharacterized protein
STRINGOPUNC11G00930.18e-83(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.12e-19WRKY DNA-binding protein 54