PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001071G0530
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 255aa    MW: 28262.5 Da    PI: 10.7841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001071G0530genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-09941272247
                      T.........-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  22 g.........tWktIartmgkgRtlkqcksrwqky 47 
                      +         +W++Ia++++ gRt++++k++w+++
  PH01001071G0530  94 RgrnieqvfiRWSLIAARLP-GRTDNEIKNYWNTH 127
                      05566666668*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.42E-7102128No hitNo description
Gene3DG3DSA:1.10.10.603.1E-13103129IPR009057Homeodomain-like
SuperFamilySSF466891.3E-7103134IPR009057Homeodomain-like
PfamPF002493.5E-7104127IPR001005SANT/Myb domain
PROSITE profilePS500906.562104128IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRARLRERC PVTPGGLNWL CPWARSSGGR RRANPSYARG GENGGRGCHF AQADAGAQKE  60
GGEKKSKIIA RRVQFFFQWA HGFALGTPKD TPRRGRNIEQ VFIRWSLIAA RLPGRTDNEI  120
KNYWNTHIRR KLLGRGIDPV THRPINDASN NVTISFHPQS PAQAPQPQPR EEDTKPLRCP  180
DLNLDLCISP PCQEDEVKPV RVLMKPLKRE LQGGLCFGCG LGLQKGAAAA ECKCSSNFLG  240
LRAGMLNFRT LEMK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001071G0530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3584051e-54AK358405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075P05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822035.19e-63myb-related protein Zm38-like
SwissprotP200253e-48MYB38_MAIZE; Myb-related protein Zm38
TrEMBLA0A3L6PKZ87e-62A0A3L6PKZ8_PANMI; R2R3-MYB transcriptional factor PvMYB4d
STRINGTRIUR3_11068-P12e-58(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.16e-25myb domain protein 7
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]