PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001092G0280
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 894aa    MW: 97412.4 Da    PI: 6.3833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001092G0280genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000696997361355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  PH01001092G0280 699 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 736
                      67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-286155IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804686735IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4699744IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHTWCPAGSE VSEVGCESGG  60
TVCTLVRKDM ASQVHVVGEG TIGRAAFTGN HQWIVHHDTA NDLGLRSEVA AEMNHQFRAG  120
IQTIAIIPVL PRGVLQLGST SVVMENTNFV LQYKKLCSQL NNRSSMVASA SVKNDVSQKV  180
QSRTLHGLSS IYAADACSKA FSGSPVTYEQ CYGPDATTVS SSTSANTGRN ASLLKVAQRN  240
GQAVRDHSLY APDMRFRPQI PYSDRRVESN TQSSVVNSGF ISSISTSVEK HPLLMTNIGQ  300
VELGNMEESS EPRNLLLESL ASRNPVVHEN TNMFPLHGGE VSDFLYGRGN FDFLPTGTRV  360
VKANLYNSTA SQVLDQRCNS TSGMKGHEPA ISHKIPQSAQ FIMKMESTKR ESFQAPAAPS  420
SGFDVQVLSG LKSAISQENQ PSSSDHVCQN QKANEVNDSS VAVSMQGVKN MDGHKLPDIS  480
NERTSSYLMD PTLENDLFDI FGTEFHHLCH NVDGNMTWNA EKSESSDRDA PESSVYLDTS  540
PVFGALDDEF PYSGIFSLTD TDQLLDAVIS NVNPGGKQIS GDSASCKTSL TDIPSSSYCG  600
SKQTKQCKSS GAPPLLVNNE SAVSNFVKQP CFLEKPEDGC LSQNNGKHKS QIRLWIESGQ  660
NMKCESVSAS NSKGHDTPNK ANRKRSRPGE NPKPRPKDRQ LIQDRIKELR ELVPNGAKCS  720
IDALLEKTIK HMLFLQSVTK HADNLKDSNE SKILGGENGP LWKDYVEGGA TWAFDVGNQS  780
IACPIIVEDL DRPRQMLVEM ICEDRGIFLE IADFIKGLGL TILRGVMEAR KNKIWARFTV  840
DANRDVTRME ILFSLVRLLE PSCDGGGAGE NPNNVKMPHG IVQHPVIPAT GHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001092G0280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578882.10.0transcription factor LHW isoform X1
TrEMBLI1IU660.0I1IU66_BRADI; Uncharacterized protein
STRINGBRADI4G41970.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-52conserved peptide upstream open reading frame 7