PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001094G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 979aa    MW: 107478 Da    PI: 7.0859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001094G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18394493198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  ++
  PH01001094G0220 394 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGNEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PRG 485
                      99**************************555567778***************9989999999***9.********************887.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  PH01001094G0220 486 KLVMGFRK 493
                      77877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-31385503IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-21391494IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-23392493No hitNo description
PROSITE profilePS5086311.35394495IPR003340B3 DNA binding domain
PfamPF023627.9E-16394493IPR003340B3 DNA binding domain
SMARTSM010191.9E-21394494IPR003340B3 DNA binding domain
PROSITE profilePS5105014.317655705IPR011124Zinc finger, CW-type
PfamPF074965.9E-11660702IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 979 aa     Download sequence    Send to blast
MAGMAAAAAA AAVKRCMNAA CGAPAPSAAG GEWRKGWPLR SGAFAVLCDK CGTGELITKN  60
LNYSDVKMRA TLFWKLTLIL LSVIALEQNL RGANIEANYH RLAYEQLVFC DIFHQKESGW  120
RDCSFCGKHL HCGCIASKNS FDLLDSGGVQ CVNCMKNSGV QSVSSQVAPK LFSLQNNQRL  180
ELLPGRPLEP PSLNADARND DIAIISKSNH PIVVKNIEAG QSSSILRQKE IENGARLIKW  240
EQPIFSIGDM GGMPFLTRTQ SALESPQCTR RDDNKDPTAD STTSESLSET CLSMSLGIAN  300
NGNKMEATST VERPILSPTT PFAEGRELAT TLSPFQHAQR ARHFLTRPPR VGEGAAFDPT  360
KDALPHLRVA RPPAEGRGRN QLLPRSNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF  420
PPISQPEGRP LTIQDAKGNE WHFQFRFWPN NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR  480
IEPRGKLVMG FRKATNTVSL PDSQISAIAN GSLLGDTLFS STNENLAIVS GYSGFLQSIK  540
GTADLHASSL FDHHVNSADG DVSWLKTDKF GGRQDEGSSQ FLQKRSRNIG SKSRRLLMDA  600
EDALELKLTW EEAQELLRPA PTAKPTIVMI EDYEFEEYDE PPVFAKRSIF TIRATGEQDQ  660
WIQCDDCSKW RRLPLNIIVA SKWTCVDNKW DPKSCSCYAP EELAPKELQS ILQQYEDIRR  720
QRSSYGLKQN IPEMDAASFD ALATAAVFGE VGNQGAASVA MTTKHPRHRP GCTCIVCIQP  780
PSGKGPKHNP ACTCNVCMTV KRRFKTLMMR KKQRQSEREE AEAGKKIAWV NRDEPEGSNL  840
SRSPQTLDTT REGDVTMFDK VDMNKGHIDL NVHPAGRDEP PLPEQHGGQP RVSMISLLKV  900
ANRPLENYMK QNGLTSLAGE QGSSSTATVP HAAPVESEEQ TSNEGRVASV EPEREPDRMA  960
VDEAGENQDK TDDDRAAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-5838749617126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1800811KRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001094G0220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646777.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A453AP440.0A0A453AP44_AEGTS; Uncharacterized protein
STRINGOMERI07G23470.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-168HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]