PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001099G0510

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 223aa MW: 24160.2 Da PI: 8.496

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001099G0510	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.2e-08	65	103	9	47
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 d l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky PH01001099G0510 65 DRLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 103 67999*********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.0E-5	40	106	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.017	42	104	IPR017877	Myb-like domain
CDD	cd00167	1.07E-7	43	104	No hit	No description
SuperFamily	SSF46689	1.4E-10	65	108	IPR009057	Homeodomain-like
Pfam	PF00249	8.4E-6	65	103	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.5E-11	65	106	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.3E-7	65	102	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MESWMEVLPL PPAPYFAGQV GGWFLQDRRE GGVGVGVGVG GGAWTLEENK VFEEALARVD 60 RDVPDRLFLM GLKKYGRGDW RNISRNFVTS RTPTQVASHA QKYFIRLNSG GKDKRRSSIH 120 DITTVNLPDD DHSNPSPSPP SVLTANSTHS AAAPVISVQF SVLVDNKPPP PLGRGGHHHF 180 VPHPYGNVKL EASNPHAAGY HGGRLDDSVL MQMQCGQLQP LG*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001099G0510

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094740	0.0	FP094740.1 Phyllostachys edulis cDNA clone: bphylf046m24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006654489.1	2e-91	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	4e-36	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	J3M7R0	5e-90	J3M7R0_ORYBR; Uncharacterized protein
STRING	OB05G26340.1	9e-91	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	7e-34	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]