PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001102G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 358aa    MW: 39585.2 Da    PI: 4.741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001102G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19110160256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++G+r+++ +g+W+AeIrdp++     r++lg+f++aeeAa+a++a +++++ge
  PH01001102G0050 110 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFDSAEEAARAYDAEALRIRGE 160
                      69*******.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.52E-33110168No hitNo description
Gene3DG3DSA:3.30.730.102.5E-31110169IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22110169IPR016177DNA-binding domain
PROSITE profilePS5103224.408110167IPR001471AP2/ERF domain
SMARTSM003804.2E-37110173IPR001471AP2/ERF domain
PfamPF008471.2E-12111160IPR001471AP2/ERF domain
PRINTSPR003678.1E-11111122IPR001471AP2/ERF domain
PRINTSPR003678.1E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MCGGAVLSDI ITPARRATDG HLRPEKKKQR RAGAGKGRRL RRGRTEGKED FAADFEEFEE  60
SGELEVELSD DEVKPFTALR SGFARDGLNA TAAGVDGPAA RLAKRKRKNQ FRGIRRRPWG  120
KWAAEIRDPR KGVRVWLGTF DSAEEAARAY DAEALRIRGE KAKVNFPDEA PMSSQKHRAE  180
PTSVAVPKFN TEEMPTIKPA ANNMANTNVY SYPVVDYSLH EPFVETQNMS FVPSMNAVKD  240
PFMNLSSDQG SNSSCSDFSW ENETKTPDIT SVLAPIPTLT EVDESAFLQN NASNAMVPPV  300
MGNASVDLTD LEPYMKFLMD GGSDESADTL LSCEESQDVV SNMDLWSFDD MPMSVGFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-221091741379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103117KRKRKNQFRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001102G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1013730.0FP101373.1 Phyllostachys edulis cDNA clone: bphyem204e11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643752.11e-170ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-128ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0E0A6771e-170A0A0E0A677_9ORYZ; Uncharacterized protein
STRINGOGLUM06G06300.11e-171(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.39e-26related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]