PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001110G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 291aa    MW: 30609.7 Da    PI: 8.2169
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001110G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.84.8e-401072061100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++C+++pyf   +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+r+PvyG++g il+lqqq++ l+ael
  PH01001110G0360 107 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRADAANSLVYEANLRLRNPVYGCMGAILALQQQVQALEAEL 200
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  PH01001110G0360 201 AAVRAE 206
                      **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.331106207IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-40107204IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVHNIHVPSK VTFCPQRYMS VQNSVTRETP LQAAHSIEDD LYSGYSLLAA GGNCMHCDWQ  60
DHELGKKIKR ESAAAAADAL ADRMMAWRSS LPSAGAGPGS AINTITPCAA CKLLRRRCAQ  120
ECPFSPYFSP LEPHKFASVH KVFGASNVSK MLLEVHESQR ADAANSLVYE ANLRLRNPVY  180
GCMGAILALQ QQVQALEAEL AAVRAEIVKH KYRPATAVAA VLPSSHASQL FAASATGRGL  240
SSSAAGSVGM GMAATLAVGP SASSSSTVYA AASSSTDYSS VTNENVPYFG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3810721011114LOB family transfactor Ramosa2.1
5ly0_B3e-3810721011114LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001110G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958310.0FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167556.11e-114LOB domain-containing protein 15-like
SwissprotQ9AT616e-69LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A3B5ZSF71e-113A0A3B5ZSF7_WHEAT; Uncharacterized protein
STRINGTraes_1DS_BB8508CC6.11e-113(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.17e-53LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]