PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001112G0620
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 235aa    MW: 24164.2 Da    PI: 10.0775
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001112G0620genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-213283156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  PH01001112G0620 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83
                     68********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-143282IPR001471AP2/ERF domain
CDDcd000182.23E-183291No hitNo description
SuperFamilySSF541719.15E-233391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-323390IPR001471AP2/ERF domain
SMARTSM003801.6E-373396IPR001471AP2/ERF domain
PROSITE profilePS5103224.3683390IPR001471AP2/ERF domain
PRINTSPR003673.2E-113445IPR001471AP2/ERF domain
PRINTSPR003673.2E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAPRPAEKVH VPPATGLGLG VGGGVGGGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDAAAREF RGAKAKTNFP APSLSPVVGG GGSPSSNSTL ESSGGRSGVV  120
QAPMQAMPLP PALDLDLYHR TAVAGGGVRF PFKGYPVGRP APHPYFFYDQ ATAAAAAAAS  180
YRTMKLAPPV TVATVAQSDS DSSSVVDLAP SPPAVTAKKA VSFDLDLNWP PAAEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-222990163ATERF1
3gcc_A3e-222990163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001112G0620
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0968130.0FP096813.1 Phyllostachys edulis cDNA clone: bphylf044i05, full insert sequence.
GenBankFP1010710.0FP101071.1 Phyllostachys edulis cDNA clone: bphylf052m18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970251.19e-95ethylene-responsive transcription factor 4
SwissprotQ404773e-35ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLK3XLF62e-93K3XLF6_SETIT; Uncharacterized protein
STRINGSi002729m4e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.18e-19erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]