PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001113G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 287aa    MW: 31621.5 Da    PI: 8.2457
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001113G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00058260281323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      Cp+C+k F ++ +L+ H  + H
  PH01001113G0360 260 CPKCSKGFLDPVLLVEHVERdH 281
                      *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.32E-14651No hitNo description
PROSITE profilePS510397.4971059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.4E-111153IPR000058Zinc finger, AN1-type
PfamPF014281.7E-141351IPR000058Zinc finger, AN1-type
SMARTSM001542.9E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-1091152IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.16E-993147No hitNo description
PROSITE profilePS510397.86698145IPR000058Zinc finger, AN1-type
PfamPF014285.6E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.02101142IPR000058Zinc finger, AN1-type
SMARTSM003550.34221244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6258286IPR007087Zinc finger, C2H2
SMARTSM003551.6258281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTPEFPDLG RHCSVGDCNQ IDFLPFTCDR CDNVFCLQHR SYTSHKCPNA NQKDVTVLVC  60
PLCAKGVRLN PNEDPNITWE SHVNTDCDPS NYQKVAKKKK CPVAGCRETL TYSNTIRCKD  120
CSKEHCLKHR FGPDHKCPGP TKVEPTFPFA NMLRRSQKVE TRSNSSNNNS SWWSSGLLNA  180
ASNFRSSAEA GMQKLSTATS QAYQKAKDGI SLNSSSSDLV EQCVHCPARF STVGALIEHV  240
EKAHQNNSQS SRSGVTIVAC PKCSKGFLDP VLLVEHVERD HGGTSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001113G0360
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0991940.0FP099194.1 Phyllostachys edulis cDNA clone: bphyem101c06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958078.11e-171zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-164SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A3L6QU761e-172A0A3L6QU76_PANMI; AN1-type zinc finger protein 2B
STRINGPavir.J03938.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]