PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001113G0580
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MIKC_MADS
Protein Properties Length: 301aa    MW: 34146.1 Da    PI: 9.522
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001113G0580genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.43.4e-22957149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     krien ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y
  PH01001113G0580  9 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHY 57
                     79*********************************************99 PP
2K-box294.4e-1173167296
            K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                      ++++++++++   ++   el+k+ k  e L++e+R +  +d e+ ++  L+ Le++Le ++ k+Rs K+  +  +i++l +  +  qee   L 
  PH01001113G0580  73 EAATHTKVWADIRQERLAELEKVGKMCELLEKELRFMAVDDGEQYTVPSLEALEHNLEVAMHKVRSEKDSKIGGEISYLENVIRGRQEERYGLC 166
                      66778889***********************************************************************999998888887775 PP

            K-box  96 k 96 
                       
  PH01001113G0580 167 D 167
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.796161IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-26287IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-22323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-223859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-1285169IPR002487Transcription factor, K-box
PROSITE profilePS512979.82585175IPR002487Transcription factor, K-box
SuperFamilySSF520801.83E-16205289IPR021131Ribosomal protein L18e/L15P
PfamPF008281.2E-4227289IPR021131Ribosomal protein L18e/L15P
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGKGRSEIKR IENPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYHYLAP  60
TVPSVKEFVE RYEAATHTKV WADIRQERLA ELEKVGKMCE LLEKELRFMA VDDGEQYTVP  120
SLEALEHNLE VAMHKVRSEK DSKIGGEISY LENVIRGRQE ERYGLCDELA HAQTLKDVEG  180
GSSSLSNGLE LKLGKSAAAV RTRFKKNRKK RDHMSAGHDR IGKHREHPGG RGNAGGMHHH  240
RILFDKYFLG YFDKVGMRYF HKLHNRFHCP VVNVEMLWSM VPAEKAAEAG ADKAPLVDVT  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_LO4e-4820230039960S ribosomal protein L27a-3
4v7e_Ca4e-4820230039960S ribosomal protein L15
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001113G0580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693140.0KF469314.1 Brachypodium distachyon MADS-box transcription factor 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644649.11e-122PREDICTED: MADS-box transcription factor 32 isoform X1
RefseqXP_015693732.11e-122PREDICTED: MADS-box transcription factor 32 isoform X2
SwissprotQ8S1511e-122MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A3Q8BCB51e-124A0A3Q8BCB5_DENLA; MADS32
STRINGOB01G38450.11e-121(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-20MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]