PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001137G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 212aa    MW: 23282.3 Da    PI: 10.205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001137G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-132066354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  PH01001137G0080 20 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 66
                     58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4911766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-142083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-112067No hitNo description
PfamPF000103.8E-112066IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-142069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-122372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.0E-4116183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MATDGECSAP ARASRKGPVR SHSEAERKRR QRINAHLATL RTLVPSASRM DKAALLGEVV  60
RHVRELRGRA DDATEGVDVI PVEGDEVGVE DYWRPDHNDG VVDDDRRWRR RVRAWVCCAD  120
RPGLMSDMGR AVRSVSARPV RAEIATVGGR TRGVLELDVC DGAVAATDND RAVALSTLRA  180
ALRTVLLNRQ ELLAAAERYK RPRFSAQIAN V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001137G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039174e-63AP003917.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1666_A04.
GenBankAP0149644e-63AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822447.11e-89transcription factor AIG1-like
TrEMBLA0A2T8IHC42e-88A0A2T8IHC4_9POAL; Uncharacterized protein
STRINGOMERI09G10040.12e-87(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.19e-19bHLH family protein