PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001141G0260
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 118aa    MW: 13073.4 Da    PI: 5.1669
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001141G0260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.78.9e-1223612563
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     ++e+eeL +kv+eL++eN aL+ el++lkk ++ +++e+
  PH01001141G0260 23 QQECEELGRKVAELTTENNALRTELDQLKKACEDMEAEN 61
                     89*********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-62358No hitNo description
SuperFamilySSF902575.49E-52373No hitNo description
PfamPF001705.0E-92361IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MSSAIFLLNT KYTWHVSFST VYQQECEELG RKVAELTTEN NALRTELDQL KKACEDMEAE  60
NTRLMSQGPT VTTTLGMSIE APEAQQHDDK GQLHKNTNNN VNGNYVGGSH KPEANSR*
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001141G0260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0930861e-107FP093086.1 Phyllostachys edulis cDNA clone: bphyem203l01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228232.12e-47DNA-binding protein EMBP-1 isoform X2
SwissprotP250326e-18EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A446KY919e-52A0A446KY91_TRITD; Uncharacterized protein
STRINGTraes_2AL_723E42163.22e-52(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-07basic region/leucine zipper transcription factor 16