PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001142G0610
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 569aa    MW: 61357.9 Da    PI: 5.6963
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001142G0610genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31304361260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh+k
  PH01001142G0610 304 EDGYSWRKYGQKQVKHSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGTHNHPK 361
                      8****************************************.***************85 PP
2WRKY33.96.2e-11519541123
                      ---SS-EEEEEEE--TT-SS-EE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                      ldDgy+WrKYGqK+vkg+++p s
  PH01001142G0610 519 LDDGYRWRKYGQKVVKGNPNPSS 541
                      59******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-25297362IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-28297362IPR003657WRKY domain
PROSITE profilePS5081122.653298362IPR003657WRKY domain
SMARTSM007744.0E-34303361IPR003657WRKY domain
PfamPF031065.2E-24304360IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-13504541IPR003657WRKY domain
SuperFamilySSF1182907.85E-9511540IPR003657WRKY domain
PROSITE profilePS5081115.043514541IPR003657WRKY domain
SMARTSM007743.3E-4519561IPR003657WRKY domain
PfamPF031061.2E-6520541IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MEEWKDPNPG PECLMPSFLT EPFPPDAVGE GGSHGYKAGF EKRGLSVAVS SPQEEGQPLP  60
MTPHFGQKSS SSSSLAERMQ ARAGFSVAKL SMPCIPPAAP DSTPSGAPSP YLTIPPGLSP  120
ATLLESPVFL SNAMCENVRI VIAFVYGMLN WQGQASPTTG KLLMLGGTND NDPTRFEGPP  180
IEYGSGAFSF KPLELKSSQY TAEEKKESLC NNQHPSLPST EVSVKTETNI QTAKEANLLG  240
HLNQQQFNGQ ALVKSSSRDS KLNHLAPDTI AGSDNASPQD HGQPSAEGDT KGDYPAMATA  300
APAEDGYSWR KYGQKQVKHS EYPRSYYKCT HPNCQVKKKV ERSHEGHITE IIYKGTHNHP  360
KPAQSRRPGV PPIHQFSDAQ MDASDNTPPG SQPNVEARSL WHNSVTVQDW RGDGLEATSS  420
PSVPGELCDS SASMQVHDGG TRIESPEGVD VTSAVSDEVD GDDRVTHGSM SHNAADAEGD  480
ELESKRRKLE SCAIEMSTAS RAVREPRVVI QTTSEVDILD DGYRWRKYGQ KVVKGNPNPS  540
SSLGPGPQWH FGLDYRIIKP QSVADPGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-153033621474WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001142G0610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823122.10.0probable WRKY transcription factor 2
TrEMBLA0A2T8ICP10.0A0A2T8ICP1_9POAL; Uncharacterized protein
TrEMBLA0A3L6PRS40.0A0A3L6PRS4_PANMI; Putative WRKY transcription factor 34
STRINGMLOC_77883.10.0(Hordeum vulgare)
STRINGTraes_2BL_2BA3A755A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-86WRKY DNA-binding protein 2