PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001144G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 543aa    MW: 59568.3 Da    PI: 6.87
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001144G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-084695071854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +Fe+   +yp+ +e+e LA + gL+ +qV++WF N R +
  PH01001144G0090 469 MFENflRPYPKDNEKEMLAVRSGLSRSQVSNWFINSRVR 507
                      57766689*****************************88 PP
2BELL33.41.1e-11339408472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsak.pYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e qk ++ Ll ll+++d++ +q+ +++q  +s F  ++  g a  +   +A +a+S  +r L+ +i++qi
  PH01001144G0090 339 EAQKLRNDLLRLLQMMDQKCNQCLDDIQNTASKFSSMVHSGGASgISSPFAHHAVSVMYRRLRKRIMSQI 408
                      77888899**************************988877766527778********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.2E-21260404IPR006563POX domain
PROSITE profilePS5007111.677448511IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-25450522IPR009057Homeodomain-like
SMARTSM003892.4E-6451515IPR001356Homeobox domain
SuperFamilySSF466891.58E-15451519IPR009057Homeodomain-like
CDDcd000865.25E-11451512No hitNo description
PfamPF059201.9E-14468507IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSSNPSYQQF GVETMNSCFI NSSMISAEAP FFHPNMPRDG SFGFGDPVAG ADIAEHFMAN  60
NMMIISPANQ LVCAAPLQNS HQGSMPSEEM NDAYVASESC STVYSILPTA CSVDFQYGPS  120
DVTIAQPSKM TKLTGEPQCS WIHDAPSATS IHEPYYLTGF SGTGFSNPLT ASSAAATELL  180
LRLGAKSSSV SMVNLPDQSS EVSCSGLTHV NSKGFDYQQP VKAQAGTGLF QPPYGDVGAG  240
NELRQVYPQM YARPLNFSQV LSRSRYAHIA QEILNGVVSC LLKDVAEITD SVSGIGSEVS  300
LLLSSSCSTR TPSVVSFNQP MFPSGEHPQN AANNGMWMEA QKLRNDLLRL LQMMDQKCNQ  360
CLDDIQNTAS KFSSMVHSGG ASGISSPFAH HAVSVMYRRL RKRIMSQIMV VTHRSSRGES  420
SLAEKERSWE SSFIQKHWAL QQLRRGDQQP WRPQRGLPEK SVAILKAWMF ENFLRPYPKD  480
NEKEMLAVRS GLSRSQVSNW FINSRVRLWK PMIEEMYEEV KKISGGSEGA AVEHLSSKDV  540
VS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001144G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196798.10.0BEL1-like homeodomain protein 2
TrEMBLD4QFI30.0D4QFI3_WHEAT; BEL1-type homeodomain protein
STRINGTraes_7DL_1654C8A74.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.13e-57homeobox gene 1