PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001154G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 359aa    MW: 38338.6 Da    PI: 10.8594
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001154G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.72e-22284325343
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SS CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversae 43 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver a+
  PH01001154G0200 284 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERRAQ 325
                      9*************************988**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.3E-18235280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-23270325IPR003657WRKY domain
PROSITE profilePS5081122.848277322IPR003657WRKY domain
SuperFamilySSF1182906.28E-19280329IPR003657WRKY domain
SMARTSM007741.5E-20282336IPR003657WRKY domain
PfamPF031068.1E-19284325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEVEVANRA AVESCHRVLS LLSQQQDPAL LRSIASETGE ACAKFRKVVS LLSNGGGGGR  60
HARGRLSRRS KPVGFLNQKG FLDSSSNTPL GMMSSSGTPS PSTSSAQLRS RIGVTPGSRG  120
LDLVSSSSKS AHQFGAPKLV QPLSVQFQFG ATAHRYPFQQ QQKLQAEMFK RSNSGVSLKF  180
DSPSGTGTMS SARSFMSSLT LSMDGSVASL DGKPPFHLIG GPAASDPVNV HHVPKRRCTG  240
RGEDGSGKCA TAGRCHCSKR RKLRIKRSIK VPAISNKIAD IPPDEYSWRK YGQKPIKGSP  300
HPRGYYKCSS VRGCPARKHV ERRAQPYPAA NTVCPDLGKP EIIVLHSGNA EAQTFAEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-13270325256WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001154G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.11e-178protein WRKY1-like isoform X1
SwissprotQ9SR073e-78WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A2T7EIW21e-178A0A2T7EIW2_9POAL; Uncharacterized protein
STRINGORUFI12G19820.11e-177(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-57WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]