PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001158G0670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 445aa    MW: 48026.7 Da    PI: 5.1237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001158G0670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11295340555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +K+++L + ++Y+k Lq
  PH01001158G0670 295 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 340
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-17288350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-12288344No hitNo description
PROSITE profilePS5088816.901290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16292349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDYSGGSYFS SWSNSASESY NFVDGSVESY AEGGMTPSGN FMRAGSDRNL KFSEHEKDPT  60
MLTNGCLPYN NQTDLLSGEI VSKDKLPHSL LELEQLQNNG NLQSNLTTQG ILQSTSTPGT  120
FHPQLDTPGL PELPHPLSSS IDSSVNLEAF GFQGAQNATM LSKTSHPNES LSVFDNATLA  180
SLHDSKEFIN GSFSSFATVQ QAQLATGGLK AQRQEQNAMC NIPLPTFISG SQMAVTEAQG  240
ALIPPKIPPL IHDNKSEYPI SHSSDVQPQA NSAHGNSVSV KPRVRARRGQ ATDPHSIAER  300
LRREKISERM KNLQDLVPNS NKADKSSMLD EIIDYVKFLQ LQVKVLSMSR LGAPGAVLPL  360
LTESQTEGRS NPPLSASTTS QGLLDIPDSE DSFAFEQEVV KLMETSITSA MQYLQNKGLC  420
LMPIALASAI SNQKGVAAVA IPPER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001158G0670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0964570.0FP096457.1 Phyllostachys edulis cDNA clone: bphyem207p22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198859.10.0uncharacterized protein LOC109784671
TrEMBLA0A0A9D1750.0A0A0A9D175_ARUDO; Uncharacterized protein
STRINGEMT304370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-58LJRHL1-like 3