PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001177G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 318aa    MW: 35237.8 Da    PI: 8.1973
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001177G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.41.2e-48151413128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPt+eel+++yL + v gkkl++ ++i +++iy+++Pw+Lp ++k++e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+ 
  PH01001177G0140  15 PGFRFHPTEEELLDFYLSRIVLGKKLHF-DIIGTLNIYRHDPWELPGMAKTGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIRSSg 107
                      9*************************99.99***************999999****************************************97 PP

              NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++glkktLvfy+grap+g+ktdWvm+eyrl
  PH01001177G0140 108 dPKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 141
                      66778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-587166IPR003441NAC domain
PROSITE profilePS5100554.95713166IPR003441NAC domain
PfamPF023651.0E-2415141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAVAGASMEV EQDLPGFRFH PTEEELLDFY LSRIVLGKKL HFDIIGTLNI YRHDPWELPG  60
MAKTGEREWY FFVPRDRKAG SGGRPNRTTE RGFWKATGSD RAIRSSGDPK RVIGLKKTLV  120
FYQGRAPRGT KTDWVMNEYR LPDYGAGRAA PAPPKEDMVL CKIYRKATPL KELEQRASAM  180
EEMQRFSNGD YAARASLVRA ASAGDDYLSS DDLQDNFLIP SSSTSGTSGN SKNAPKEAKK  240
EGDVTVTVAS TTSLPQAAGL PSLQLPAASH GVLDLPSLQL PANHGVFDWL QEPFLTQLRS  300
PWQDQHCLSP YAHLLYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-481516819167NO APICAL MERISTEM PROTEIN
1ut4_B5e-481516819167NO APICAL MERISTEM PROTEIN
1ut7_A5e-481516819167NO APICAL MERISTEM PROTEIN
1ut7_B5e-481516819167NO APICAL MERISTEM PROTEIN
3swm_A5e-481516822170NAC domain-containing protein 19
3swm_B5e-481516822170NAC domain-containing protein 19
3swm_C5e-481516822170NAC domain-containing protein 19
3swm_D5e-481516822170NAC domain-containing protein 19
3swp_A5e-481516822170NAC domain-containing protein 19
3swp_B5e-481516822170NAC domain-containing protein 19
3swp_C5e-481516822170NAC domain-containing protein 19
3swp_D5e-481516822170NAC domain-containing protein 19
4dul_A5e-481516819167NAC domain-containing protein 19
4dul_B5e-481516819167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001177G0140
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690517.10.0PREDICTED: NAC domain-containing protein 67 isoform X1
SwissprotQ10S651e-171NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0E0K8E31e-173A0A0E0K8E3_ORYPU; Uncharacterized protein
STRINGOPUNC03G02420.11e-174(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-85NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]