PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001180G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 529aa    MW: 57633.8 Da    PI: 6.8254
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001180G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.2e-094564941854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  PH01001180G0090 456 MFENflRPYPKDNEKEMLAARSGLSRSQVSNWFINARVR 494
                      57766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075269.3E-7260391IPR006563POX domain
PROSITE profilePS5007111.953435498IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-26437511IPR009057Homeodomain-like
CDDcd000867.32E-12438499No hitNo description
SMARTSM003891.6E-7438502IPR001356Homeobox domain
SuperFamilySSF466895.56E-16438507IPR009057Homeodomain-like
PfamPF059207.1E-16455494IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSSNPSYQQF GVEAMNSCFI SSSMISAEAP FFHPNMPQDG SFGFGVPADG ADIAAHFMAN  60
NMMITSPANQ LVCAAPLQDS HHGSMSSEEM NDAYVASESC STVHSMLPTA CSVDLQYGPS  120
DVTIAQPSKM AKLTAVPQCS WIYDGPNATS IHEPYYLSGF TGTGFSSPFA ASSAAASELT  180
LRLGAKSSSV SMVNLPDQSS EVSCSGLTHV NSKGFGYQQP LKAQTGTGLF QPPYGDVGAG  240
NELRQVYPQM YSRPLHFSQV LSRSRYAHIA QEILNGVVGC LLKDVTEITD SVGGIGNEAS  300
LLFSSSCSTR TQCAVSSNQL MFPSEEHPHD PADSGRWMED QKLRNDLLKL LQLNTTSKFS  360
NMVHSGGASS ISAPFAHHAV SVMNRRLRKR IMSQIMVVTQ GSSRGESSLA EKERSWESSF  420
IQKHWALQQL RRGDQQSWRP QRGLPEKSVA VLKAWMFENF LRPYPKDNEK EMLAARSGLS  480
RSQVSNWFIN ARVRLWKPMI EEMYEELKKT SGGSEGVAVE HLSSNVVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001180G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5466452e-98AB546645.1 Triticum aestivum WBLH2-2 mRNA for BEL1-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196798.10.0BEL1-like homeodomain protein 2
TrEMBLD4QFI30.0D4QFI3_WHEAT; BEL1-type homeodomain protein
STRINGTraes_7DL_1654C8A74.31e-174(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.18e-49homeobox gene 1