PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001197G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 522aa    MW: 57599.9 Da    PI: 5.8714
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001197G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.37.4e-1321515201373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++++++c +av+++d  +++ l+++l +l+s +gdpmqRl ay++e+L arl++s+s+ly++l+++e +   sse +++++l++e++P++kf+
  PH01001197G0410 151 LKQVIIACGKAVAEKDVFATELLISELGQLVSISGDPMQRLGAYMLEGLVARLSSSGSKLYESLKCKEPT---SSELMSYMHLLYEICPFFKFG 241
                      57899****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp lRiTg+++++s   +   l  +g rL ++ +++g+pfefn+ v  + 
  PH01001197G0410 242 YVSANGAIAEAIKGENFVHIIDFQIAQGSQWATLIQALAARPGGPPCLRITGIDDSNSAhaRGGGLDIVGMRLYNVSQSCGLPFEFNA-VPAAS 334
                      *******************************************************8888889999***********************.7999* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ++++le+L+++pgE++aVn+++qlh+++desvs+e++rd++L+++kslsP+vv++veqe+++n+++F+ r le+l+yy+a+f+s+++ lpr+++
  PH01001197G0410 335 HEVHLEHLDIRPGEVIAVNFAYQLHHTPDESVSTENHRDRILRMIKSLSPRVVTLVEQESNTNTAPFFPRYLETLDYYTAMFESIDVALPRDDK 428
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       ri+ E+++++r+ivn+++cegaer+erhe ++kW++r+++aGF p+pls+ +++++k+ll+ ++s  yr+ee++g l+lgWk+r Lv+ SaW
  PH01001197G0410 429 RRISAEQHCVARDIVNLISCEGAERVERHEVFGKWKARFQMAGFIPYPLSSVVNNTIKTLLHSYNSY-YRLEERDGILYLGWKNRVLVVSSAW 520
                      *****************************************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.547125502IPR005202Transcription factor GRAS
PfamPF035142.6E-129151520IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MAHYNNSVPL GENGRCYITQ SHPDLHYTSS DDGSQKITSN PQVFEAQYCT LESSSANGVY  60
PTQSSTSSHS ISHISGSPLS QHDSHSDHAY SSLPSASCVP EVADLQVKLK ELENAVLGPE  120
LDIASDSSLQ ANIPSKPDNW RQLLGINTGD LKQVIIACGK AVAEKDVFAT ELLISELGQL  180
VSISGDPMQR LGAYMLEGLV ARLSSSGSKL YESLKCKEPT SSELMSYMHL LYEICPFFKF  240
GYVSANGAIA EAIKGENFVH IIDFQIAQGS QWATLIQALA ARPGGPPCLR ITGIDDSNSA  300
HARGGGLDIV GMRLYNVSQS CGLPFEFNAV PAASHEVHLE HLDIRPGEVI AVNFAYQLHH  360
TPDESVSTEN HRDRILRMIK SLSPRVVTLV EQESNTNTAP FFPRYLETLD YYTAMFESID  420
VALPRDDKRR ISAEQHCVAR DIVNLISCEG AERVERHEVF GKWKARFQMA GFIPYPLSSV  480
VNNTIKTLLH SYNSYYRLEE RDGILYLGWK NRVLVVSSAW W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-611535206374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001197G0410
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573869.10.0scarecrow-like protein 21
RefseqXP_010234693.10.0scarecrow-like protein 21
RefseqXP_014756863.10.0scarecrow-like protein 21
RefseqXP_024317186.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0A9EAW10.0A0A0A9EAW1_ARUDO; GRAS54
STRINGBRADI3G24210.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]