PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001200G0110

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 396aa MW: 43411.2 Da PI: 7.1111

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001200G0110	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	190	206	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C k+F+r n++ PH01001200G0110 190 FSCPVCYKTFNRYNNMQ 206 89********9988765 PP
2	zf-C2H2	14.1	0.00014	291	313	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ PH01001200G0110 291 FMCRKCGKAFAVRGDWRTHEKNC 313 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.59E-6	275	311	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	287	311	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	291	311	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MGDPYTNFLR GYHHLRYSNP SPTSYSSSPS FPSYTSYLHP PPSSPPIREA LPLLSLTPST 60 QPHHHRHDQD KEEEPCTHTT SCSNQEAPAA DDQAGEVTVA LHIGLPGPCP SEAAAAGSGD 120 HQEGSAAGGR SLQDGQEAEG GGCGEGEEEG EGEDGVTMPL GCASIGIGRL TKGQYWIPTP 180 SQILIGPTQF SCPVCYKTFN RYNNMQVGFG FTDSWLIIFV HLLMHMWGHG SQYRKGPESL 240 RGTQPTAMLR LPCYCCAAGC RNNIDHPRAR PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF 300 AVRGDWRTHE KNCGKLWYCA CGSDFKHKRS LKDHIRAFGR GHAACGIDCF DLDDDDRDPS 360 SEVDHATTTT VNAAGNDHHQ WTPPAPRSGD HRSDR*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MGDPYTNFLR GYHHLRYSNP SPTSYSSSPS FPSYTSYLHP PPSSPPIREA LPLLSLTPST  60
QPHHHRHDQD KEEEPCTHTT SCSNQEAPAA DDQAGEVTVA LHIGLPGPCP SEAAAAGSGD  120
HQEGSAAGGR SLQDGQEAEG GGCGEGEEEG EGEDGVTMPL GCASIGIGRL TKGQYWIPTP  180
SQILIGPTQF SCPVCYKTFN RYNNMQVGFG FTDSWLIIFV HLLMHMWGHG SQYRKGPESL  240
RGTQPTAMLR LPCYCCAAGC RNNIDHPRAR PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF  300
AVRGDWRTHE KNCGKLWYCA CGSDFKHKRS LKDHIRAFGR GHAACGIDCF DLDDDDRDPS  360
SEVDHATTTT VNAAGNDHHQ WTPPAPRSGD HRSDR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001200G0110

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243261	0.0	AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149153.1	1e-163	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-124	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	F2E153	1e-165	F2E153_HORVV; Predicted protein
STRING	MLOC_65351.2	1e-166	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-113	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]