PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001201G0540

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 217aa MW: 22867.4 Da PI: 5.2259

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001201G0540	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.3	8e-14	159	207	3	51
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 + +r++r++kNRe+A rsR+RK+a+i eLe v +Le+e +L e ee PH01001201G0540 159 AMQRQKRMIKNRESAARSRERKQAYIVELEAQVTQLEEEHAQLLREQEE 207 689***************************************9988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-5	157	215	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	159	207	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-12	159	207	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.72E-18	161	207	No hit	No description
SuperFamily	SSF57959	1.19E-10	161	210	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.3E-13	162	207	No hit	No description
PROSITE pattern	PS00036	0	164	179	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MASSRVMAAA AASPPQPQPP ASSDLARFRS GSGIGSMSMD DILSNIYGEA PPPGAGDGPA 60 EPSPAPEVAS RRTAEEVWKE ISAAGGLSAP AGGSAGDAAE ITLEDFLARE DDARVTRVER 120 KMVVGFPDGA EGAAGGRGGG GGSGRGRKRV LMDPMDRAAM QRQKRMIKNR ESAARSRERK 180 QAYIVELEAQ VTQLEEEHAQ LLREQEERNQ RRLEAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	141	GGRGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00648	PBM	Transfer from LOC_Os05g36160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001201G0540

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003568373.1	9e-88	bZIP transcription factor 12
Swissprot	Q0JHF1	1e-51	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0Q3G420	2e-86	A0A0Q3G420_BRADI; Uncharacterized protein
STRING	BRADI2G24120.3	2e-83	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	3e-17	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]