PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001206G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 330aa    MW: 36363 Da    PI: 6.1892
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001206G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-092582932055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++++  LA+++gL+++q+ +WF N+R ++
  PH01001206G0320 258 YKWPYPSETDKIALAESTGLDQKQINNWFINQRKRH 293
                      4679*****************************885 PP
2ELK43.66.2e-15213234122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKhqLlrKY+gyLg+L+qEFs
  PH01001206G0320 213 ELKHQLLRKYGGYLGNLRQEFS 234
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-2081125IPR005540KNOX1
PfamPF037904.6E-2282123IPR005540KNOX1
SMARTSM012564.9E-27133184IPR005541KNOX2
PfamPF037912.4E-23139183IPR005541KNOX2
PfamPF037891.2E-11213234IPR005539ELK domain
SMARTSM011882.1E-8213234IPR005539ELK domain
PROSITE profilePS5121311.819213233IPR005539ELK domain
PROSITE profilePS5007112.86233296IPR001356Homeobox domain
SuperFamilySSF466893.55E-19234304IPR009057Homeodomain-like
SMARTSM003891.8E-12235300IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-28238297IPR009057Homeodomain-like
CDDcd000865.77E-13245296No hitNo description
PfamPF059205.0E-17253292IPR008422Homeobox KN domain
PROSITE patternPS000270271294IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MESFANLGGG GGGGSSSTSK ASFLQLPLPA AAPSAELIPP DAHHSSPLAL HQLLAGPSST  60
QHGLHKDGAV VQGEISPADA DTVKAKIMSH PQYSALLAAY LDCQKVAAPP DVLDRLSAVA  120
AKLDALPAHG QREHEPRRAD PELDQFMEAY CNMLVKYCEE LARPIQEATE FFKRVETQLD  180
SITDSNCEGA GSSEDDQDTS CPEEIDPCAE DKELKHQLLR KYGGYLGNLR QEFSKRKKKG  240
KLPKEARQKL LHWWELHYKW PYPSETDKIA LAESTGLDQK QINNWFINQR KRHWKPTAGD  300
MPFSMMEGGF HVPQGTAALY MVDGIYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001206G0320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0999520.0FP099952.1 Phyllostachys edulis cDNA clone: bphyst012d12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981606.11e-174homeobox protein knotted-1-like 12
SwissprotQ10ED21e-123KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A3G0ZGF10.0A0A3G0ZGF1_DENLA; KNOX1 protein
STRINGPavir.Ia00428.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-97KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]