PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001208G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ZF-HD
Protein Properties Length: 229aa    MW: 24935.9 Da    PI: 9.0049
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001208G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.85.3e-283889358
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     +++Y+eCl+NhAa+ Ggh+vDGC+Efmp+    +  + l+CaACgCHR+FHRr+++
  PH01001208G0150 38 RLQYHECLRNHAAAAGGHVVDGCCEFMPA----SPDDPLTCAACGCHRSFHRRDPS 89
                     689*************************9....4458****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-133187IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.1E-243987IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-234087IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.7474187IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.9E-28141212IPR009057Homeodomain-like
SuperFamilySSF466899.51E-19145211IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-23155210IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEFTGQEGGG DVGAASPPRP LHCGIPANGP TGTPAEARLQ YHECLRNHAA AAGGHVVDGC  60
CEFMPASPDD PLTCAACGCH RSFHRRDPSP GHAGAGAQLP LLAANTRAPV LLPPPASKHP  120
QQRLPFPYRT PSGGAGTTTE SSSEERRGPA PAPRRRSRTT FTREQKEQML AFAERVGWRI  180
QRQDEATMEQ FCAQVGVRRQ VLKVWMHNNK HSSTIRRQQL EQRQEQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-261552121875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001208G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172063.11e-107zinc-finger homeodomain protein 5-like
SwissprotQ5VM827e-66ZHD5_ORYSJ; Zinc-finger homeodomain protein 5
TrEMBLA0A077RTB81e-109A0A077RTB8_WHEAT; Uncharacterized protein
TrEMBLA0A077RY201e-109A0A077RY20_WHEAT; Uncharacterized protein
TrEMBLA0A446PTW41e-109A0A446PTW4_TRITD; Uncharacterized protein
STRINGLPERR01G20500.29e-77(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-36homeobox protein 22