PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001210G0270

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

WRKY

Protein Properties

Length: 201aa MW: 21525.8 Da PI: 8.5932

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001210G0270	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.9	3.3e-31	112	170	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg Hnh PH01001210G0270 112 LDDGYRWRKYGKKSVKNSPNPRNYYRCSTEGCSVKKRVERDRDDPSYVVTTYEGIHNHV 170 59********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-33	97	171	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-28	105	171	IPR003657	WRKY domain
PROSITE profile	PS50811	31.72	107	172	IPR003657	WRKY domain
SMART	SM00774	9.6E-36	112	171	IPR003657	WRKY domain
Pfam	PF03106	8.2E-25	113	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MAYPPPRGGS SSSPYSSSSA ASLSPTFGAA LPGALHHQQQ HLDVLDYFSD EGGPSSVPGA 60 FGTPPPLMPV EPVVPDAGGY YANPRSAAAM AGEAGARTDR IAFRMRSEEE ILDDGYRWRK 120 YGKKSVKNSP NPRNYYRCST EGCSVKKRVE RDRDDPSYVV TTYEGIHNHV SPGTVYYAAQ 180 DAASGRFFVA GIGNQSRLAK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-25	103	172	8	77	Probable WRKY transcription factor 4
2lex_A	7e-25	103	172	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001210G0270

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108555	8e-92	AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence.
GenBank	AY870609	8e-92	AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds.
GenBank	HQ858873	8e-92	HQ858873.1 Oryza sativa Japonica Group isolate UT1750 WRKY transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003569675.1	1e-78	WRKY transcription factor WRKY62
Swissprot	Q93WU9	3e-39	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	I1HQX3	3e-77	I1HQX3_BRADI; Uncharacterized protein
STRING	BRADI2G48090.1	5e-78	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-39	WRKY DNA-binding protein 50

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]