PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001233G0100

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

STAT

Protein Properties

Length: 1359aa MW: 151578 Da PI: 7.3156

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001233G0100	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	186.9	2.5e-58	262	379	1	117
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 l+vvl+na+g+pv+kd++vvasL+yad+g+vveks dd+e+pLLi+++G+e+++++rpl+++rGra+fklkisqLsskcdn+Lf+i+f++++ + PH01001233G0100 262 LEVVLINAFGEPVNKDTQVVASLVYADNGAVVEKSrDDSEPPLLITCEGLEYPAKSRPLPIIRGRALFKLKISQLSSKCDNKLFCIYFSTLHTR 355 79*******************************9****************************************************** PP STAT 94 kypfleavskpirCisrsrntrss 117 ypf+ea skpirCisr+r++r++ PH01001233G0100 356 IYPFMEASSKPIRCISRNRTSRPL 379 ******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55550	1.21E-6	637	721	IPR000980	SH2 domain
PROSITE profile	PS50001	9.381	643	785	IPR000980	SH2 domain
CDD	cd01651	4.41E-49	797	1085	No hit	No description
SuperFamily	SSF56672	1.36E-5	808	869	No hit	No description
Pfam	PF01348	1.8E-7	1115	1209	IPR024937	Domain X

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006397	Biological Process	mRNA processing
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 1359 aa Download sequence Send to blast
MAAPECGGSD GYCELRDVRV ELDPGMSRVD GEGGKGGGGF TVCFWLYLSG SARPSSVILH 60 QITMGDDNKL PFLALSEGNK LLLFPLLRLH REAPTPASSY PWTDTTNLSA VKECPLEKWI 120 HIGCENILAL AESAEVCSDT FLHLYIFGVH LCFQLQVTEN VMRLHIDGNL VAEAHLCSLF 180 NEPDNQDNAN QISLVGSDDK LEGYVYNIQV SSILETIQEQ YAKNPPFKLS IDYSCCDGIE 240 EGDDGIWSIV GGKASCRRNF ILEVVLINAF GEPVNKDTQV VASLVYADNG AVVEKSRDDS 300 EPPLLITCEG LEYPAKSRPL PIIRGRALFK LKISQLSSKC DNKLFCIYFS TLHTRIYPFM 360 EASSKPIRCI SRNRTSRPLV FGKRAGSATM DEIPSLNNGQ GFGHDGKANG HLQSHDQSSV 420 VCLRPSKISK VQGNGMDTRK MVSQNKQARK MVVGIEAQNA LGTDSATSDS DSIDARSSWS 480 GSDGDEVETF SDAMIFRYCL EGTYERSTFL RDTAASIDED DLVKLANQVC LYSGCSHHRN 540 QILMLKQLLQ EGAHTWSIIS KNKERALWSS AVPEIITKFM DVAHSTNRGL SEQDLEVLRG 600 IAGCGDDLGR DEFDRLWYWL YPVAASLSKD KINKLWDCTA PRWIEGLITI DEAENALRSS 660 RELLKKPGTF VLRFPTTRSW PHPDAGSLVV TYVGSDNSIH HRLLSFDVSD ASSGNLQDLL 720 LQEPELSQLG RQAHTKAYAD ETGSYLPRSS IPASTLASLL ALRNAVLDAR FRFGNRLTPF 780 LPSPLAASAP DPATLSKRKL RALLTTPGPA PFQDRVVQEL LLLLLEPVYE ARFSPKSFAF 840 RPGRSPHAAL RTIRRSYAPY LWYIKGDLSP LLHSPDPALV VGALIRDVRD KKVVDLIRSA 900 LLTPVVTARP GDDAAAKKKT KRKYQKKKVL PEGEPKPDPY WLQTFFGFAP EEALTQPDWG 960 HCGVLSPLLA NVCLDELDKW MEEKIKEFYR PSKSDVVGGD DGVEQGNTSW PEFVPTSGPD 1020 KTRKVDYIRY GGHFLIGVRG PRADAAVLRK QLVEFCDQRF RIKLDNESLP IEHITKGIMF 1080 LDHVLCRRVV YPTLRYTASG GKIISEKGVG TLLSVTASLK QCIKQFRKLE FLKGDREPDP 1140 QPCFRMFHAT QAHTNSQMNK LLLTMAEWYR YADNRKKVVN FCSYIIRGSL AKLYAAKYKL 1200 RSRAKVYKIA SRNLSRPLKD KKGQSPEYHN LLRMGLVDSI DGLQYTRMSM VPDPDYTPLP 1260 GGWRPDHEKI LLEYIKLTDQ QALEEQRSCI REEGLITPQD YISMLVWSYK KNAVLLPSSK 1320 ESDSQGSTED LGSDTDELDN KELGNEGRQG FPKAAEML*

Sequence ? help Back to Top

Protein Sequence Length: 1359 aa Download sequence Send to blast

MAAPECGGSD GYCELRDVRV ELDPGMSRVD GEGGKGGGGF TVCFWLYLSG SARPSSVILH  60
QITMGDDNKL PFLALSEGNK LLLFPLLRLH REAPTPASSY PWTDTTNLSA VKECPLEKWI  120
HIGCENILAL AESAEVCSDT FLHLYIFGVH LCFQLQVTEN VMRLHIDGNL VAEAHLCSLF  180
NEPDNQDNAN QISLVGSDDK LEGYVYNIQV SSILETIQEQ YAKNPPFKLS IDYSCCDGIE  240
EGDDGIWSIV GGKASCRRNF ILEVVLINAF GEPVNKDTQV VASLVYADNG AVVEKSRDDS  300
EPPLLITCEG LEYPAKSRPL PIIRGRALFK LKISQLSSKC DNKLFCIYFS TLHTRIYPFM  360
EASSKPIRCI SRNRTSRPLV FGKRAGSATM DEIPSLNNGQ GFGHDGKANG HLQSHDQSSV  420
VCLRPSKISK VQGNGMDTRK MVSQNKQARK MVVGIEAQNA LGTDSATSDS DSIDARSSWS  480
GSDGDEVETF SDAMIFRYCL EGTYERSTFL RDTAASIDED DLVKLANQVC LYSGCSHHRN  540
QILMLKQLLQ EGAHTWSIIS KNKERALWSS AVPEIITKFM DVAHSTNRGL SEQDLEVLRG  600
IAGCGDDLGR DEFDRLWYWL YPVAASLSKD KINKLWDCTA PRWIEGLITI DEAENALRSS  660
RELLKKPGTF VLRFPTTRSW PHPDAGSLVV TYVGSDNSIH HRLLSFDVSD ASSGNLQDLL  720
LQEPELSQLG RQAHTKAYAD ETGSYLPRSS IPASTLASLL ALRNAVLDAR FRFGNRLTPF  780
LPSPLAASAP DPATLSKRKL RALLTTPGPA PFQDRVVQEL LLLLLEPVYE ARFSPKSFAF  840
RPGRSPHAAL RTIRRSYAPY LWYIKGDLSP LLHSPDPALV VGALIRDVRD KKVVDLIRSA  900
LLTPVVTARP GDDAAAKKKT KRKYQKKKVL PEGEPKPDPY WLQTFFGFAP EEALTQPDWG  960
HCGVLSPLLA NVCLDELDKW MEEKIKEFYR PSKSDVVGGD DGVEQGNTSW PEFVPTSGPD  1020
KTRKVDYIRY GGHFLIGVRG PRADAAVLRK QLVEFCDQRF RIKLDNESLP IEHITKGIMF  1080
LDHVLCRRVV YPTLRYTASG GKIISEKGVG TLLSVTASLK QCIKQFRKLE FLKGDREPDP  1140
QPCFRMFHAT QAHTNSQMNK LLLTMAEWYR YADNRKKVVN FCSYIIRGSL AKLYAAKYKL  1200
RSRAKVYKIA SRNLSRPLKD KKGQSPEYHN LLRMGLVDSI DGLQYTRMSM VPDPDYTPLP  1260
GGWRPDHEKI LLEYIKLTDQ QALEEQRSCI REEGLITPQD YISMLVWSYK KNAVLLPSSK  1320
ESDSQGSTED LGSDTDELDN KELGNEGRQG FPKAAEML*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	38	GGKGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001233G0100

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC087599	0.0	AC087599.14 Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7547	31	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17040.1	1e-144	SH2 domain protein A