PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001236G0110

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NF-YB

Protein Properties

Length: 162aa MW: 17519.5 Da PI: 6.5101

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001236G0110	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	173.8	1.7e-54	23	118	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+ yv+p++ yl+kyreleg PH01001236G0110 23 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDGYVDPMRRYLHKYRELEG 116 89******************************************************************************************** PP NF-YB 96 ek 97 ++ PH01001236G0110 117 DR 118 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-50	19	124	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-38	25	124	IPR009072	Histone-fold
Pfam	PF00808	4.3E-27	28	91	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.0E-17	56	74	No hit	No description
PROSITE pattern	PS00685	0	59	75	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.0E-17	75	93	No hit	No description
PRINTS	PR00615	4.0E-17	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MADHHNQLGG SPDMAAAAGE EIKEQDRLLP IANVGRIMKQ ILPPNAKISK EAKETMQECV 60 SEFISFVTGE ASDKCHKEKR KTVNGDDVCW AFGALGFDGY VDPMRRYLHK YRELEGDRAA 120 AAASSRGGPD HPSTSGAGAS GTGHFMFNAM ERSDNNSSRQ F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-43	22	113	1	92	Transcription factor HapC (Eurofung)
4g92_B	3e-43	22	113	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001236G0110

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242118	1e-138	AK242118.1 Oryza sativa Japonica Group cDNA, clone: J075146M01, full insert sequence.
GenBank	HG670306	1e-138	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635864.1	3e-80	nuclear transcription factor Y subunit B-1
Refseq	XP_015635872.1	3e-80	nuclear transcription factor Y subunit B-1
Swissprot	Q75IZ7	3e-56	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A2WYT1	9e-80	A2WYT1_ORYSI; Uncharacterized protein
STRING	ORUFI01G46550.1	1e-79	(Oryza rufipogon)
STRING	OS01T0935200-01	1e-79	(Oryza sativa)
STRING	ORGLA01G0368700.1	1e-79	(Oryza glaberrima)
STRING	OBART01G43130.1	1e-79	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	3e-57	nuclear factor Y, subunit B5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]