PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001245G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 592aa    MW: 63226.2 Da    PI: 6.2722
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001245G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.6e-32209266260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  PH01001245G0180 209 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 266
                      8****************************************.***************85 PP
2WRKY106.51.4e-33382440159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++dpk v++tYeg+Hnhe
  PH01001245G0180 382 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNTGCPVRKHVERASHDPKSVITTYEGKHNHE 440
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-28200267IPR003657WRKY domain
PROSITE profilePS5081123.801203267IPR003657WRKY domain
SuperFamilySSF1182908.63E-25207267IPR003657WRKY domain
SMARTSM007743.6E-35208266IPR003657WRKY domain
PfamPF031062.0E-24209265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37367442IPR003657WRKY domain
SuperFamilySSF1182901.44E-29374442IPR003657WRKY domain
PROSITE profilePS5081138.526377442IPR003657WRKY domain
SMARTSM007741.7E-39382441IPR003657WRKY domain
PfamPF031062.3E-26383440IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MADSPNPSSG DLPAGVGSSP ENPAPAYGRV AAGAGARYKA MSPARLPISR EPCLTIPAGF  60
SPSALLESPV LLTNFKVEPS PTTGTLSMAA IMNKSAHPNI LPSPRDNSVG TAPEDGGSRD  120
FEFKPHLNSS SQSLAPAIND QKNHEPSMQN QSLNPIVDVS SAPNQPVGMV GLTDSMPAEV  180
GPSDLHQMNS SENAVQETQS ENVAEKSAED GYNWRKYGQK HVKGSENPRS YYKCTHPNCE  240
VKKLLERSLD GQITEVVYKG RHNHPKPQPS RRLAAGAVPS NQGEERYDGV AATEDKSSNV  300
LSNLGNPVHS AGMVEPVPGS VSDDDIDAGG GRPYPGDDAT EDDDLESKRR KMESAGIDAA  360
LMGKPNREPR VVVQTVSEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTN TGCPVRKHVE  420
RASHDPKSVI TTYEGKHNHE VPAARNASHE MSTPPMKTLV HPINSNMPGL GGMMRACEAR  480
TFTNQYSQAA ESDTISLDLG VGISPNHSDA TNQMRSSVPD QMQYQMQPMA SVYGSMGLPA  540
MPVPTVPGNA ANSIYGSREE KGSEGFTFKA TPMDHSANLC YSSAGNLVLG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36189443278Probable WRKY transcription factor 4
2lex_A1e-36189443278Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001245G0180
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2013840.0KM201384.1 Stipa purpurea WRKY17 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646742.10.0WRKY transcription factor SUSIBA2 isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A0B5GUL90.0A0A0B5GUL9_9POAL; WRKY17 transcription factor (Fragment)
STRINGOMERI07G17160.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-125WRKY family protein