PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001245G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 545aa    MW: 59924.9 Da    PI: 6.4687
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001245G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.25.6e-1371755441373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL++cA+av++++  +++ ++ +l++++s +g+p++Rl ay++e+L arla+s+s++ykal+++e +   ss+ l+++++++ev+P++kf+
  PH01001245G0190 175 LKELLIACARAVEEKNSFAIDLMVPELRKMVSVSGEPLERLGAYMVEGLVARLASSGSSIYKALKCKEPK---SSDLLSYMHFLYEVCPYFKFG 265
                      5799*****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI eav+ge+r+HiiDf+isqG+QW++LlqaLa+Rp+gpp++RiTg++++ s   +   le +g+rL+++A  ++vpfef++ va + 
  PH01001245G0190 266 YMSANGAIAEAVKGEDRIHIIDFQISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAyaRGGGLELVGRRLSHIAGLCKVPFEFHA-VAVSG 358
                      *******************************************************888899999************************.7999* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++e  +L v pgEa+aVn++l+lh+++de+vs++++rd++L+lvk+lsPkvv++veqe+++n+++F++rf+e+l+yy+a+f+s++ +lpr+++
  PH01001245G0190 359 SEVEEGHLGVIPGEAVAVNFILELHHIPDETVSTANHRDRILRLVKGLSPKVVTLVEQESNTNTAPFAQRFAETLDYYTAVFESIDLTLPRDDK 452
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      eri+vE+++l+reivn+vacegaer+erhe ++kW++rl++aGF+p pls+ +++++++ll+ ++++ y++ e++g l+lgWk+rpLv+ SaW
  PH01001245G0190 453 ERINVEQHCLAREIVNLVACEGAERVERHELFGKWKARLTMAGFRPSPLSSLVNATIRTLLQSYSMN-YQLAERDGVLYLGWKNRPLVVSSAW 544
                      *****************************************************************88.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.439149526IPR005202Transcription factor GRAS
PfamPF035141.9E-134175544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005829Cellular Componentcytosol
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MADTPTSRMM HPSGNIPRQN PKQFQYSDNP QHPCHPCQAP SDTHAAPQHD YSLKSHSPDA  60
GSENQVTPKR YTLDSSAAAG CMRHDSPSSH SFSPRSCSPQ SQEDSHSDST NGSPVSASCV  120
TEDPHDLKQK LKDLEAVMLG PDSEIVNSLE SSVANQLSLE PDKWVRMMGI PRGNLKELLI  180
ACARAVEEKN SFAIDLMVPE LRKMVSVSGE PLERLGAYMV EGLVARLASS GSSIYKALKC  240
KEPKSSDLLS YMHFLYEVCP YFKFGYMSAN GAIAEAVKGE DRIHIIDFQI SQGAQWISLL  300
QALAARPGGP PTVRITGIDD SVSAYARGGG LELVGRRLSH IAGLCKVPFE FHAVAVSGSE  360
VEEGHLGVIP GEAVAVNFIL ELHHIPDETV STANHRDRIL RLVKGLSPKV VTLVEQESNT  420
NTAPFAQRFA ETLDYYTAVF ESIDLTLPRD DKERINVEQH CLAREIVNLV ACEGAERVER  480
HELFGKWKAR LTMAGFRPSP LSSLVNATIR TLLQSYSMNY QLAERDGVLY LGWKNRPLVV  540
SSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-671795458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001245G0190
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0992430.0FP099243.1 Phyllostachys edulis cDNA clone: bphylf036n16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562815.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLQ1WBS80.0Q1WBS8_9POAL; Putative chitin-inducible gibberellin-responsive protein
STRINGOPUNC07G19030.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]