PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001253G0390
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 172aa    MW: 18933.7 Da    PI: 10.591
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001253G0390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-1589125135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  PH01001253G0390  89 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 125
                      **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101713.4931860IPR010402CCT domain
PfamPF062032.6E-161858IPR010402CCT domain
SMARTSM004012.3E-1083137IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-1186137No hitNo description
Gene3DG3DSA:3.30.50.103.7E-1487127IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.52E-1289135No hitNo description
PfamPF003201.8E-1389125IPR000679Zinc finger, GATA-type
PROSITE patternPS00344089116IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAVPNAYDEK STTVAARRVA SLMRFREKRK ERCFDKKIRY SVRKEVAQKM KRRKGQFAGR  60
AHFGDGACSS AACGSPANGE DDHFRETHCQ NCGISSRLTP AMRRGPAGPR SLCNACGLMW  120
ANKGTLRSPL NAPKMTLQHP ANLSKMGDTD NNKAILHAEH NQATIKIDSE M*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001253G0390
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880761e-170AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651787.21e-112PREDICTED: GATA transcription factor 19
RefseqXP_015632019.11e-111GATA transcription factor 19 isoform X1
RefseqXP_015632020.11e-111GATA transcription factor 19 isoform X2
RefseqXP_015691252.11e-112PREDICTED: GATA transcription factor 19
SwissprotQ0DNU11e-112GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A0E0KIP91e-111A0A0E0KIP9_ORYPU; Uncharacterized protein
STRINGOPUNC03G30420.11e-112(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-37ZIM-like 1