PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001281G0440

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 720aa MW: 77547 Da PI: 4.7358

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001281G0440	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.8	4.2e-07	221	242	4	25
XCHHHCHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKk 25 k rr+++NReAAr+sR+RKk PH01001281G0440 221 HKILRRLAQNREAARKSRLRKK 242 57789****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.3E-6	211	243	No hit	No description
PROSITE pattern	PS00036	0	225	240	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-30	551	626	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MPGFGAPQHT MMLEIITVVG PDLQRNKRKD GHPDVNSMQP SRVTDFVALA SAGFRIEDLA 60 NLSTSIHPDV NSMQPSRVTD FVALASAGFR IEDLANLSTN TLLNLKPNTR TIINDPLQFE 120 NYGKFISPTD TTTTAAAAAA AATVGPQALV QQKGAQPNLV AVRTGNIENW GESTMADTSP 180 RTDTSTDPDI DERNHMQFEQ GQLAAPTASD SSDKSKDKSD HKILRRLAQN REAARKSRLR 240 KKVISSSVVI WCEEFDLEDR EDGAFAESSS CVLLGRESIG GYDGRYGRQG EKTVQAVALL 300 AMIIVELVAV SKVVLMLELV VKVHVGVGVG IGIGRGYACD EVEVMEAETR GVWAEWWKPG 360 VAGGIGVEED EVEAGPDHGG LGDDVPKGYF VEHLGCGERI PEGGVHGEQG IWHGVAGVDV 420 GRLEEIGVHD EAVARRQSMR SAEKGEERGN VGAAAAGGGG CWWEVVEEAV VGDGVPWGGG 480 RVAEVGEGEV YIQNLESSRL KLTQLEQELQ RARQQGIFIS TSGDQSHSMN GNGALAFDME 540 YARWLEEHNK HINELRAAIN AHAGDNDLRS IVDIIMAHYD EIFRLKGVAV KADVFHVLSG 600 MWKTPAERGF MWLGGFRSSE LLKLLAGQLE PLTEQQLAGI GNLQQSSQQA EDALSQGMEA 660 LQQSLAETLA SGSLGHAGSS GNVANYMGQM AMAMGKLGTL ENFLRQQRIG ISPYYTLEL*

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MPGFGAPQHT MMLEIITVVG PDLQRNKRKD GHPDVNSMQP SRVTDFVALA SAGFRIEDLA  60
NLSTSIHPDV NSMQPSRVTD FVALASAGFR IEDLANLSTN TLLNLKPNTR TIINDPLQFE  120
NYGKFISPTD TTTTAAAAAA AATVGPQALV QQKGAQPNLV AVRTGNIENW GESTMADTSP  180
RTDTSTDPDI DERNHMQFEQ GQLAAPTASD SSDKSKDKSD HKILRRLAQN REAARKSRLR  240
KKVISSSVVI WCEEFDLEDR EDGAFAESSS CVLLGRESIG GYDGRYGRQG EKTVQAVALL  300
AMIIVELVAV SKVVLMLELV VKVHVGVGVG IGIGRGYACD EVEVMEAETR GVWAEWWKPG  360
VAGGIGVEED EVEAGPDHGG LGDDVPKGYF VEHLGCGERI PEGGVHGEQG IWHGVAGVDV  420
GRLEEIGVHD EAVARRQSMR SAEKGEERGN VGAAAAGGGG CWWEVVEEAV VGDGVPWGGG  480
RVAEVGEGEV YIQNLESSRL KLTQLEQELQ RARQQGIFIS TSGDQSHSMN GNGALAFDME  540
YARWLEEHNK HINELRAAIN AHAGDNDLRS IVDIIMAHYD EIFRLKGVAV KADVFHVLSG  600
MWKTPAERGF MWLGGFRSSE LLKLLAGQLE PLTEQQLAGI GNLQQSSQQA EDALSQGMEA  660
LQQSLAETLA SGSLGHAGSS GNVANYMGQM AMAMGKLGTL ENFLRQQRIG ISPYYTLEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001281G0440

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP097013	0.0	FP097013.1 Phyllostachys edulis cDNA clone: bphyem208m15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644874.2	1e-138	PREDICTED: transcription factor HBP-1b(c1)-like isoform X2
Refseq	XP_015699294.1	1e-138	PREDICTED: transcription factor HBP-1b(c1)-like isoform X1
Swissprot	Q6IVC2	1e-137	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	J3L527	1e-137	J3L527_ORYBR; Uncharacterized protein
STRING	OB01G43330.1	1e-137	(Oryza brachyantha)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	3e-97	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]