PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001302G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 248aa    MW: 26451.2 Da    PI: 8.3517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001302G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-1389134454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  Av YI +L
  PH01001302G0050  89 SHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAVAYIAEL 134
                      799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.27585134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1688150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1689149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.01E-1289135No hitNo description
PfamPF000109.5E-1189134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-1191140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDEQLISLSS SSSTHYPAAS FSAAAGHPVL EFMSCDVPEQ WLLADDSAWA VGSSLSPGSH  60
MLLQGNAPPL TAKRRGRKPG PRSYGPTISH VEAERQRRDK LNRRFCDLRA AVPTVSRMDK  120
ASLLADAVAY IAELRGRAER LEAEAKQAAA ARNVPSGTAT AAEAFGLEEK LEVRMVGREA  180
AAVRLTTAAL HAPARLMGAL RALDLPLQHA CVSRVGAVTV QDAVVDVPAA LQVEGCLRAA  240
LFHRLQES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1988147766Transcription factor MYC2
5gnj_B4e-1988147766Transcription factor MYC2
5gnj_E4e-1988147766Transcription factor MYC2
5gnj_F4e-1988147766Transcription factor MYC2
5gnj_G4e-1988147766Transcription factor MYC2
5gnj_I4e-1988147766Transcription factor MYC2
5gnj_M4e-1988147766Transcription factor MYC2
5gnj_N4e-1988147766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001302G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0973410.0FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444643.11e-100transcription factor bHLH14
TrEMBLA0A1B6PIG03e-99A0A1B6PIG0_SORBI; Uncharacterized protein
STRINGSb07g025310.11e-100(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-27bHLH family protein