PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001302G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 252aa    MW: 26583.9 Da    PI: 5.9762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001302G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1292137454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI++L
  PH01001302G0300  92 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYISEL 137
                      89************************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04688137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1690153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-1091137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.78E-1291142No hitNo description
Gene3DG3DSA:4.10.280.103.9E-1692152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1194143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDELISSCSP TSSSAPGHPV LEFVSCEVPE QWLVGDDELD DDPSCQEGVA WAVGSSRSTG  60
SDLSGNPPAM TERAAKRRGR KPGPRSDGPT VSHVEAERQR REKLNRRFCD LRAAVPTVSR  120
MDKASLLADA AAYISELRGR VERLEDEAKQ AAAARKAPSA ATAASHALGL EERLEVRMVG  180
REAAALRLTT AARHAPAGLM GALRALDLPV QHACVSRVGA VTVQDAVVDV PAALQDEGSL  240
RAALLHGLQE S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-2091150766Transcription factor MYC2
5gnj_B8e-2091150766Transcription factor MYC2
5gnj_E8e-2091150766Transcription factor MYC2
5gnj_F8e-2091150766Transcription factor MYC2
5gnj_G8e-2091150766Transcription factor MYC2
5gnj_I8e-2091150766Transcription factor MYC2
5gnj_M8e-2091150766Transcription factor MYC2
5gnj_N8e-2091150766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001302G0300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0973411e-171FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444643.11e-109transcription factor bHLH14
TrEMBLA0A1B6PIG01e-108A0A1B6PIG0_SORBI; Uncharacterized protein
STRINGSb07g025310.11e-108(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.18e-28bHLH family protein