PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001325G0370
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family E2F/DP
Protein Properties Length: 249aa    MW: 27409.6 Da    PI: 10.8643
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001325G0370genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.32e-21115175371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr++++k   ++ek+e+ g++t+ne  ++    d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  PH01001325G0370 115 GRGLRQFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 175
                      689*******...*****999******9..566...8899********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.6E-10110138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.8E-25113175IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-19116175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-16116176IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-22139181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011380.0071182247IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.02E-10182235No hitNo description
PfamPF087818.8E-6183235IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVSGTRTSGG AALSASTSGG SAGSPPRRPA AGAGGLGLGL HAGQREHRCP PPQQPRHPGR  60
RRAIVAARRE IWLMRSGVAC GDLNCRALAM EEVVREMRCK KKKRGTRIVG PDKGGRGLRQ  120
FSMKVCEKVE SKGRTTYNEQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS  180
MDDIEELKTE LIGLKGRLDK KSTYLQELQD QRNEQLYGSG NAPSGGVALP FILVQPLWSF  240
IVGRRTLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-28112180693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001325G0370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409893e-70AK240989.1 Oryza sativa Japonica Group cDNA, clone: J065051E11, full insert sequence.
GenBankAK2878093e-70AK287809.1 Oryza sativa Japonica Group cDNA, clone: J065179H06, full insert sequence.
GenBankAY2245513e-70AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169170.14e-80Transcription factor-like protein DPB
SwissprotQ9FNY22e-69DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D9Z2678e-81A0A0D9Z267_9ORYZ; Uncharacterized protein
STRINGOGLUM03G03940.11e-80(Oryza glumipatula)
STRINGOMERI03G03770.12e-81(Oryza meridionalis)
STRINGORUFI03G03750.12e-81(Oryza rufipogon)
STRINGONIVA03G03810.12e-80(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-72Transcription factor DP