PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001331G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 262aa    MW: 28392.2 Da    PI: 10.2069
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001331G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1053.9e-33140197259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C vkk+ver+++dp vv++tYeg+H+h+
  PH01001331G0040 140 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCGVKKRVERARDDPGVVVTTYEGKHTHP 197
                      8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-35124199IPR003657WRKY domain
SuperFamilySSF1182904.18E-29132199IPR003657WRKY domain
PROSITE profilePS5081132.191134199IPR003657WRKY domain
SMARTSM007746.5E-39139198IPR003657WRKY domain
PfamPF031066.0E-27140197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAATAAHDGY YLTDDADLAA AIAPFTSFLD LLDVPDQRVM PLPVRRHRPA HPLPPTTPPA  60
PARAPPTTPF PSPPSTTETP LPLPLPVAAV MTTPRSNRNP PALAPPPQTP NKAQKQQRER  120
EFEREPRFAF KTRSEVDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTSASC GVKKRVERAR  180
DDPGVVVTTY EGKHTHPCPT AAMPMPLRPR IASSTPPPPA VVDGGGGGGG GGGGGRGRWG  240
LQLVQHDVVV GPDQVQAKRE LH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28129199777Probable WRKY transcription factor 4
2lex_A2e-28129199777Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001331G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988100.0FP098810.1 Phyllostachys edulis cDNA clone: bphyst005o12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022948546.12e-45probable WRKY transcription factor 23
TrEMBLA0A0K9RLH18e-44A0A0K9RLH1_SPIOL; Uncharacterized protein
TrEMBLG7ICW16e-44G7ICW1_MEDTR; WRKY transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-37WRKY DNA-binding protein 23