PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001331G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 247aa    MW: 25611.6 Da    PI: 8.4793
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001331G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.26.9e-33118175259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C vkk+ver+++dp vv++tYeg+H+h 
  PH01001331G0070 118 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCGVKKRVERARDDPGVVVTTYEGKHTHA 175
                      8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-34103177IPR003657WRKY domain
SuperFamilySSF1182907.32E-29110177IPR003657WRKY domain
PROSITE profilePS5081131.663112177IPR003657WRKY domain
SMARTSM007741.8E-38117176IPR003657WRKY domain
PfamPF031061.0E-26118174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAATAAHGGK YQFTNDADLA AAIAPFLDPL DVTDQRIMPL PPPPTSMHSP LSNDSSGTRP  60
DDPFPITPTP IHHHKHAGDD AKKPPALPPP PPAQDGKRQR EWEPRFAFKT RSEVDHLEDG  120
YRWRKYGQKA VKNSPFPRSY YRCTSASCGV KKRVERARDD PGVVVTTYEG KHTHACPAAA  180
TPTPTPLRPR IAAAPPSPVA VGAGVADGGG VATGVGGGDA AGAAGRGGEA GSGAGQEGAG  240
LALNEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-29108178878Probable WRKY transcription factor 4
2lex_A3e-29108178878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001331G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988101e-136FP098810.1 Phyllostachys edulis cDNA clone: bphyst005o12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082928.15e-45probable WRKY transcription factor 23
TrEMBLS5CKF11e-43S5CKF1_JATCU; WRKY transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-39WRKY DNA-binding protein 23