PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001338G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 373aa    MW: 40980.3 Da    PI: 10.1345
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001338G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.2e-067698123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k F r  nL+ H r H
  PH01001338G0010 76 FVCEVCNKGFQREQNLQLHRRGH 98
                     89*******************88 PP
2zf-C2H213.80.00017152174123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  PH01001338G0010 152 WKCDKCNKRYAVQSDWKAHSKTC 174
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.47E-77598No hitNo description
Gene3DG3DSA:3.30.160.604.7E-67598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.2E-57698IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00417698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0947698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM00355300117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-5140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.47E-7147172No hitNo description
SMARTSM00355110152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAAASSAHFF GLGEAQMQPP PQQTVPPPPQ QVVSAPDAAA TGTPAPKKKR NQPGNPNPDA  60
EVIAMSPRTL LATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPK ETRRRVYLCP  120
EPTCVHHDPS RALGDLTGIK KHYCRKHGEK KWKCDKCNKR YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRR DSFITHRAFC DALAQDSARM PPIGAGLYGS VSMALGLSGM AASQLPTFQD  240
QAHSTGATAI SGNAAVSQFE HFMPSPVSSP AFRPAQPTSS ASSPFYLGSA EDGQTQPGPC  300
HTSLLHGKPA FHGLMQLPEQ HQPGNNSLPN SGFFWGASGG QDARLVFPDQ FNFNGTAARE  360
RPLRWRRARK QQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35148213368Zinc finger protein JACKDAW
5b3h_F2e-35148213368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001338G0010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1011440.0FP101144.1 Phyllostachys edulis cDNA clone: bphyem208d18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821061.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
SwissprotQ8GYC11e-113IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A2T7DAL60.0A0A2T7DAL6_9POAL; Uncharacterized protein
STRINGPavir.Fb02381.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-111indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]