PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001344G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 264aa    MW: 28562.6 Da    PI: 8.6395
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001344G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-071033226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     +t+lC++    GtC+y  +C+FaH+
  PH01001344G0380 10 RTKLCCNVWT-GTCPYVTNCNFAHS 33
                     6888888888.*************8 PP
2zf-CCCH18.73e-0682107126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd C+F H+
  PH01001344G0380  82 YKGRHCKKFYTEEGCPYGDACTFLHD 107
                      78888********************7 PP
3zf-CCCH42.31.2e-13164189126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +k+++C+ +  tG+C++G++C+FaHg
  PH01001344G0380 164 WKMRICNKWEMTGYCPFGSKCHFAHG 189
                      89***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.108235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6739IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-10940IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-51033IPR000571Zinc finger, CCCH-type
SMARTSM003560.571034IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.62981109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-781109IPR000571Zinc finger, CCCH-type
SMARTSM003560.381108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-981109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-16159193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-9160194IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-8163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009163191IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10164189IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MFFKTKLCFR TKLCCNVWTG TCPYVTNCNF AHSVEELRKL PPNWLEIMAA HEEATEQREE  60
HQIPIMTSSS VVTGDNGSGR AYKGRHCKKF YTEEGCPYGD ACTFLHDEQS KARESVAISL  120
SPSVGGGSYN SVGGGSYNSA ASVGGGSYNS AAAANGPTQK PSNWKMRICN KWEMTGYCPF  180
GSKCHFAHGA AELHKYGGGL VDMDSRDAAS TPDSKQAAVL RKMIRKGGPR LVFCRLCVRG  240
SVPLTSLEVL VGIAKPGLNR VCVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001344G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0913380.0FP091338.1 Phyllostachys edulis cDNA clone: bphyem205b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198349.11e-118zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-107C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A446YGU41e-119A0A446YGU4_TRITD; Uncharacterized protein
TrEMBLA0A446YGY51e-119A0A446YGY5_TRITD; Uncharacterized protein
STRINGTraes_7DL_D19D5E59C.11e-118(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-75C3H family protein