PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001344G0480

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

LSD

Protein Properties

Length: 275aa MW: 29740.5 Da PI: 8.1004

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001344G0480	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.9	6.9e-13	29	53	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA sV+Ca+C tV PH01001344G0480 29 CSGCRNLLMYPAGAMSVCCAVCSTV 53 ***********************99 PP
2	zf-LSD1	45.5	1.2e-14	68	92	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV PH01001344G0480 68 CGGCHTLLMYIRGATSVQCSCCHTV 92 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-12	26	56	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.1E-10	29	53	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.3E-14	65	94	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.3E-12	68	92	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MPVPLAPYPT PPVPFTPPNV SGAQSQLVCS GCRNLLMYPA GAMSVCCAVC STVTAVPAPG 60 TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEGPN LAYFPCAFLK NFFHYALLFV 120 PILELNYTGD TGMSTNNNID EKCFTYDGQS YDRLTIALPM FFSLSSLQPG QRTNPARKRI 180 VQANILCIAP LNIDNKIAET CKHKHPNAAI RGYNTSDGRC WSRNRASVSG TQARVLGTVC 240 LTLYPTMMVA WHPVPANSLQ QSWHATHLSL ECIA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001344G0480

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091666	1e-129	FP091666.1 Phyllostachys edulis cDNA clone: bphyst007l18, full insert sequence.
GenBank	FP094210	1e-129	FP094210.1 Phyllostachys edulis cDNA clone: bphylf003c20, full insert sequence.
GenBank	FP097106	1e-129	FP097106.1 Phyllostachys edulis cDNA clone: bphyst016n22, full insert sequence.
GenBank	FP097837	1e-129	FP097837.1 Phyllostachys edulis cDNA clone: bphylf033i22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002281099.1	2e-55	PREDICTED: protein LOL1 isoform X2
Refseq	XP_010663767.1	2e-55	PREDICTED: protein LOL1 isoform X2
Refseq	XP_010663773.1	2e-55	PREDICTED: protein LOL1 isoform X2
Refseq	XP_010663776.1	2e-55	PREDICTED: protein LOL1 isoform X2
TrEMBL	F6HTB1	6e-54	F6HTB1_VITVI; Uncharacterized protein
STRING	VIT_02s0012g00990.t01	1e-54	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	7e-34	lsd one like 1