PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001362G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 241aa    MW: 26174.2 Da    PI: 8.5764
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001362G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31128186159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+
  PH01001362G0060 128 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCHVKKRVERERDDARFVITTYDGVHNHP 186
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33115188IPR003657WRKY domain
SuperFamilySSF1182902.88E-28120188IPR003657WRKY domain
PROSITE profilePS5081132.833123188IPR003657WRKY domain
SMARTSM007746.1E-36128187IPR003657WRKY domain
PfamPF031063.3E-24129186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSSYTSLLSL SPGDRPPPAV SSYLSFDIDV GEYYYPPEAA APSPAFHTEQ LAPAQLLASL  60
RGTDDHKIGE LAGGGGGDSS KQSQLEVGVL SSAGLASHDK IDRGSTSGGA RSKGSKIAFK  120
TMSKADVLDD GYRWRKYGKK MVKNSPNPRN YYRCSSEGCH VKKRVERERD DARFVITTYD  180
GVHNHPAPPR PRGCAGYSLA LGQPQGQRVE EEWLSTEARC FLDMKLHAAR DGAHSIWRDN  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-26115189175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001362G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274031e-94KR827403.1 Triticum aestivum WRKY52 transcriptional factor mRNA, complete cds.
GenBankKT7289101e-94KT728910.1 Triticum aestivum clone LKc002 WRKY protein mRNA, partial cds.
GenBankKT8658771e-94KT865877.1 Triticum aestivum clone KL04 WRKY mRNA, partial cds.
GenBankKT8658781e-94KT865878.1 Triticum aestivum clone KL05 WRKY mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566817.14e-58probable WRKY transcription factor 75
TrEMBLA0A140EXP19e-62A0A140EXP1_WHEAT; WRKY (Fragment)
STRINGTraes_3B_E408A7B56.11e-59(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.14e-37WRKY DNA-binding protein 51