PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001363G0470

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

LBD

Protein Properties

Length: 245aa MW: 25425.8 Da PI: 8.1535

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001363G0470	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.7	5.3e-40	30	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+ae PH01001363G0470 30 PCGACKFLRRKCVSGCIFAPYFDSEEgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVITICYEAQARLRDPVYGCVAHIFALQQQVANLQAE 123 7*******************998879************************************************************** PP DUF260 94 lallkee 100 l +l+++ PH01001363G0470 124 LTYLQAH 130 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.14	29	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-40	30	128	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSSGGSTSTL GGGGAGGPSG SGSGGGGGGP CGACKFLRRK CVSGCIFAPY FDSEEGAAHF 60 AAVHKVFGAS NVSKLLLQIP AHKRLDAVIT ICYEAQARLR DPVYGCVAHI FALQQQVANL 120 QAELTYLQAH LATLELPSPQ LPAPPMPTPA PFSISDLPLS TNIPTTVDLS ALFDPPAQQQ 180 WALQQQHPQH QLRQPSYGAP ASRATSGMAE SPAGGGDLQA LARELLARHG RSAVKPEQPP 240 PPHSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-38	26	124	7	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-38	26	124	7	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001363G0470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094077	0.0	FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160420.1	1e-105	LOB domain-containing protein 30
Swissprot	O81323	5e-73	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A287PBQ6	1e-105	A0A287PBQ6_HORVV; Uncharacterized protein
TrEMBL	A0A453II57	1e-105	A0A453II57_AEGTS; Uncharacterized protein
STRING	Traes_4DL_A2012EA68.1	1e-104	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	8e-68	LOB domain-containing protein 18

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]