PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001382G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 312aa    MW: 33894.9 Da    PI: 6.5081
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001382G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.52.2e-13241264226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ + r G C+yG+rC+FaHg
  PH01001382G0080 241 KTELCNKWER-GACPYGARCRFAHG 264
                      8*********.*************9 PP
2zf-CCCH19.12.3e-06277303127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt +C+ fa+   C+yG rC+F H+p
  PH01001382G0080 277 YKTLPCQMFAAASGCPYGHRCHFRHSP 303
                      9************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-16234271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995239266IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-8239265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-8239270IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10241264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-10272302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7273303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432276304IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4276303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEGELEFGFL SPARSSCVSS EGGDFGSSMW ASLPEKLLDS PSSCISDGHG RGNGGGFSSP  60
TWESPLETLL DSPSSCVSHG RGGGNGGYRS PLGVSVEQGS EVREAERLLR AIAERYDDCF  120
IRLRDATAEL ADLRRERLRL SAENLHLSLL LEDLETEQRK HASAVAPTPP PKPVEEEAAR  180
GAAPKSISIR SKGYLSQKQP QGEAEPQRLR VRAPSAMEEA GEKEMGDGEV EMEVYRQGAA  240
KTELCNKWER GACPYGARCR FAHGLHELRP VIRHPRYKTL PCQMFAAASG CPYGHRCHFR  300
HSPPSAAAES Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A1e-172413031174Tristetraproline
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001382G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186681e-107AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372671e-107AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149591e-107AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-107CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561710.11e-129putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-122C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A0E0CZD21e-130A0A0E0CZD2_9ORYZ; Uncharacterized protein
STRINGBRADI1G64800.11e-128(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-40C3H family protein