PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001385G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 405aa    MW: 44589.7 Da    PI: 9.9072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001385G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28e-052392581130
                      HHHHHHHHHHHHHHCTSCCC CS
              HLH  11 rRRdriNsafeeLrellPka 30 
                      rRR riN+++  L+el+P++
  PH01001385G0290 239 RRRGRINEKMRALQELIPNC 258
                      8*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-5239266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016592Cellular Componentmediator complex
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MQQAQTAAAH QHEATGGDAP PKQVAQAMER LGRAGRLIAD IRLGADRLLE ALFVAGDAPP  60
HSAQQHADST ARAVAQEEAA MHRHFDDLRA LGRSCLHFGG RQLEESGVLN GALKARGNSW  120
GLHMPLVCPD GAVVAYAWKR QLAGQAGASA VDRTRLALKA FTDQKRRFFP HLEDEVLSHL  180
HDGESGIAKK PRLPASNGEL EEKTLSEILK NLENEEHTDK ALQYFLSVEP SKALSLLLRR  240
RGRINEKMRA LQELIPNCNK MMSMGTRLCV LPMLLSAVAM QHLQMPPMAH FPYLGAMGLG  300
FGVGTFDMVP LLRVVGAQFP CPMIPGAPWR CRPARPPCPC SAYMGRQCLR WRHFLRRRVT  360
WLTTPCRSSR CPAKQLHEEA QTPVTILNFP SSHKHVGPKP SLAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001385G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641221e-138AK364122.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621632.11e-122mediator of RNA polymerase II transcription subunit 27
TrEMBLQ5NBA81e-122Q5NBA8_ORYSJ; Uncharacterized protein P0453A06.7
STRINGOGLUM01G11670.11e-123(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-07phytochrome interacting factor 3