PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001389G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LSD
Protein Properties Length: 125aa    MW: 13195.2 Da    PI: 9.7955
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001389G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.52.3e-136887120
          zf-LSD1  1 CggCrtlLsYPrGApsVRCa 20
                     Cg+Crt+L+YP+GApsV+Ca
  PH01001389G0360 68 CGQCRTTLMYPYGAPSVKCA 87
                     *******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.0E-106587IPR005735Zinc finger, LSD1-type
PfamPF069433.4E-116887IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAARCRVRVG HGHGSDTQWL VTAFVLNLHS NGKPSAPPSS SRDHDVLGAC PFVWISLLTL  60
NNIAHVNCGQ CRTTLMYPYG APSVKCAPTS QPQNVTVVVE NPMTVDKKGK LVSNVAVGVT  120
TGKK*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001389G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0967282e-39FP096728.1 Phyllostachys edulis cDNA clone: bphyst019b14, full insert sequence.
GenBankFP1002152e-39FP100215.1 Phyllostachys edulis cDNA clone: bphylf025n04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650331.11e-26PREDICTED: protein LOL3
RefseqXP_015690721.11e-26PREDICTED: protein LOL3
SwissprotQ6ASS23e-27LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0D3FLM12e-29A0A0D3FLM1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NYP42e-29A0A0E0NYP4_ORYRU; Uncharacterized protein
STRINGOMERI03G23730.12e-31(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.63e-20LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]