PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001389G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 518aa    MW: 54455 Da    PI: 7.1999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001389G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15310386455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC............................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas.........................kapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++                           +++   +Ka++L +A+eY+ksLq
  PH01001389G0560 310 VHNLSERRRRDRINEKMRALQELIPHCNkvpnaqqstpfspgksaeihllinlLPSHCQTDKASMLDEAIEYLKSLQ 386
                      6*************************888***********************9999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-16304336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.215306385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-14309390No hitNo description
Gene3DG3DSA:4.10.280.101.2E-17310394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-13310386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-17312391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16364400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MNQYVPDWGN MGDTSRPLGE DDDLIELLWC NGHVVMQSQT HRKLSPRPEK AAAAAAQEDE  60
VGLGFQFALA DSLDKDIFSE LFCEAPGAAA GGTGAGVDGS KPCRDAPLGD DKRGGACAVS  120
EAPPRDLMPP PKSTHMSRSR QQTISLADGS DNAGDLSDLV RTRTAGASGK TAMEAGASSM  180
LSAIGSSICG SNQVQVQRAV SEPGRVGRVS DTARGGSGSA LPSAVGSANA NAGGRGHEAT  240
VASSSGRSNC CFGTTTTEPT STSNRSSKRK RLDTEDSESP SEDGESESAA LARKPPQKLT  300
TARRSRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKVP NAQQSTPFSP GKSAEIHLLI  360
NLLPSHCQTD KASMLDEAIE YLKSLQLQLQ MMWMGSGMAP PVMFPGVHQY LPRMGAVGMG  420
AAAMTSMSMT RMPFMTPQSV VPNTAAVNPV PLCVPQNHGP SGYRTHMPAH YAQGLSYYPL  480
GAKAVHQNPT LHVPSGSTPA AATTPGVPHQ TEDQAPV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314319ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001389G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4878302e-94AJ487830.1 Oryza sativa mRNA for BP-5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794697.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A2T7C3N40.0A0A2T7C3N4_9POAL; Uncharacterized protein
STRINGSi035110m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-28phytochrome interacting factor 3