PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001392G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 248aa    MW: 25794.8 Da    PI: 4.8383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001392G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.3e-184693152
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  PH01001392G0010 46 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 93
                     57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-1946105No hitNo description
PfamPF008471.3E-124693IPR001471AP2/ERF domain
PROSITE profilePS5103223.03747104IPR001471AP2/ERF domain
SMARTSM003803.0E-3447110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3147106IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2147105IPR016177DNA-binding domain
PRINTSPR003673.4E-104859IPR001471AP2/ERF domain
PRINTSPR003673.4E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MPEQEVCSPA SSGGASSSPP ASPVQGERRG GGGGGEKRAR DGGRHPSYRG VRMRAWGKWV  60
SEIREPRKKS RIWLGTFPTP EMAARAHDAA ALVVKGPAAV LNFPDMAAAL PRPASAAPRD  120
VQAAAARAAA MEPSLHQDPA AAAVAAALLP PASAPAKPTP KNCAPADDEL EAIFELPRLD  180
EDAAEPVFGA ASFHDVTPAD QSWCDPVWID DDGYAAHDDL FGLGLGLDLD ADYHGWGQSV  240
GALLWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1842104972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001392G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036821e-115AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149621e-115AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624743.11e-87ethylene-responsive transcription factor ERF039
SwissprotQ9LYD32e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0E0NC403e-86A0A0E0NC40_ORYRU; Uncharacterized protein
TrEMBLI1NYR53e-86I1NYR5_ORYGL; Uncharacterized protein
TrEMBLQ6ETB03e-86Q6ETB0_ORYSJ; Putative AP2 domain-containing protein
STRINGORUFI02G09750.15e-87(Oryza rufipogon)
STRINGORGLA02G0087100.15e-87(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]