PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001393G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 254aa    MW: 27547.8 Da    PI: 5.1295
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001393G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-171660147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g W++eEde+l++ + ++G g W+ Ia++++ gRt++++k++w++ 
  PH01001393G0410 16 KGLWSPEEDEKLYNHIIRYGVG-WSQIASHLP-GRTDNEIKNFWNSC 60
                     678*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-161070IPR009057Homeodomain-like
PROSITE profilePS5129422.3731165IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-221165IPR009057Homeodomain-like
SMARTSM007174.5E-151563IPR001005SANT/Myb domain
PfamPF002493.3E-151660IPR001005SANT/Myb domain
CDDcd001672.06E-141958No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRHACTGGV QQKLRKGLWS PEEDEKLYNH IIRYGVGWSQ IASHLPGRTD NEIKNFWNSC  60
LKKKLRQRGI DPSTHKPISA AAAAAALDPT SLDQKSPLDV TDDCFWMKAL QDQKSPLVVT  120
AGCCGMKFDP FPVTDGLVLY GHLGGEDAAG FVDYGSVLDV SENLGYGESS SNSSNWNCAV  180
GAPEVKNVLQ GGEALHWTSE SKVEPFVGYG GEGEALEHKF VLPCHGQQEP SMPHFDFDVG  240
RGAVVGEFNL EYF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001393G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9616184e-57EU961618.1 Zea mays clone 237078 myb-related protein Hv33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644576.11e-113PREDICTED: myb-related protein Hv33-like
SwissprotP200273e-45MYB3_HORVU; Myb-related protein Hv33
TrEMBLJ3L3A01e-112J3L3A0_ORYBR; Uncharacterized protein
STRINGOB01G37060.11e-113(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-29myb domain protein 86