PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001397G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 290aa    MW: 31237 Da    PI: 7.6086
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001397G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.2e-27121180258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp v+++tY+g+H++
  PH01001397G0220 121 DDGHSWRKYGQKEILGAKHPRGYYRCTHRnsqGCAATKQVQRTDEDPMVFDVTYHGTHTC 180
                      8***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-28114181IPR003657WRKY domain
PROSITE profilePS5081123.009115178IPR003657WRKY domain
SuperFamilySSF1182903.01E-25118180IPR003657WRKY domain
SMARTSM007741.7E-39120182IPR003657WRKY domain
PfamPF031067.9E-27121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDCMEGNGGS RLVVTELSHI KELVKQLEVQ LGGSPELCKH LASQIISLTE RSIGMIKSGR  60
FDGRKRSAGD AGLDSPLSAT PSPLSDVSDM PFETKKKRKT MEKRKHQIRV SSAGGAETPI  120
DDGHSWRKYG QKEILGAKHP RGYYRCTHRN SQGCAATKQV QRTDEDPMVF DVTYHGTHTC  180
VQRAMAGQAA AGKSQPVQNP DAHSLLQSLS SSLTVKTEGL AATEPQDWST MPFYFSPVSG  240
LAPEHNPFST PSTSENCFAQ GVSVSPSLVS PATSDSNHLS LAPFPVADAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-23120180868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001397G0220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0974350.0FP097435.1 Phyllostachys edulis cDNA clone: bphylf045f19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200629.11e-126WRKY transcription factor WRKY62-like
TrEMBLA0A1D8F0I21e-174A0A1D8F0I2_9POAL; WRKY74-1 protein
STRINGTraes_5BL_0A3D332A8.11e-126(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-36WRKY DNA-binding protein 30