PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001420G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WOX
Protein Properties Length: 254aa    MW: 26899.3 Da    PI: 10.488
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001420G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.67.5e-07167217247
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvW 47 
                      r+R+t+++eq+ +Le+ F++   +p +e   ++ k l     + +++V++W
  PH01001420G0140 167 RSRWTPKQEQVLILESIFNSgMVNPPKEVTVRIHKLLkrfgTVGDANVFYW 217
                      89*****************99************999999999********9 PP
2Wus_type_Homeobox76.53.8e-25166228264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +r+RWtP++eQ+ iLe++++sG+++P+ke + ri + L+++G ++d+NVfyW     aR++++
    PH01001420G0140 166 VRSRWTPKQEQVLILESIFNSGMVNPPKEVTVRIHKLLKRFGTVGDANVFYWRGGLAARSQRR 228
                        589*************************************************99999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.2E-4167217IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAMGGSACQY EQQSSSSSSS GSTGGSSLGL FAHGAGVSGA VDGGYLQASC GASSVLASRL  60
MGDVDSGGSD DLLAISRQMG FVENPRGSSS AAPSIAAQRQ YYSGQLPAVH MHQTTEGTFD  120
DVNVDFAPTV LFVCIEVMQN SRRPSLGLLE RRGGGGGGGW GAGEPVRSRW TPKQEQVLIL  180
ESIFNSGMVN PPKEVTVRIH KLLKRFGTVG DANVFYWRGG LAARSQRRRG KRRIMRKTNS  240
QSHLCLTSQP RKR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001420G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0184883e-55BT018488.1 Zea mays clone EL01N0424F07.d mRNA sequence.
GenBankBT0877863e-55BT087786.1 Zea mays full-length cDNA clone ZM_BFb0202I23 mRNA, complete cds.
GenBankEU9539123e-55EU953912.1 Zea mays clone 1449250 homeobox domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164667.19e-29WUSCHEL-related homeobox 6-like
TrEMBLA0A3B6HR401e-30A0A3B6HR40_WHEAT; Uncharacterized protein
TrEMBLA0A446QV931e-30A0A446QV93_TRITD; Uncharacterized protein
TrEMBLM7ZHX81e-30M7ZHX8_TRIUA; WUSCHEL-related homeobox 6
STRINGTraes_4AS_EC04D9E8A.12e-31(Triticum aestivum)
STRINGTRIUR3_34808-P12e-31(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-27WUSCHEL related homeobox 11