PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001434G0280
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 682aa    MW: 79835.1 Da    PI: 8.2655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001434G0280genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.9e-09658680426
                      ---SGGGGTS.--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartG.tCkyGdrCkFaHg 26 
                      ++C+++++ G +C+yG++CkF+H+
  PH01001434G0280 658 KPCHYYQQ-GwWCPYGENCKFSHD 680
                      79******.77************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.28E-6653680IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126654681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5656680IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041656681IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-7658680IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MAAAATADRR AGLPREEDDR REEEEEEEEE EELEEEVESD EEGGDDDGSE AASLADLCDP  60
DAGSDEDLTF APAADGDREV ETVLRSRMAR MSISGRKDRK GSGVPKMGKE EVGLLAMVDK  120
LMQVVTFFFC LPMPFKCYFV TLMEHLIILG DTCKGDVVMF EQNIYKRKKG ASREVKGRLC  180
GQRTNAGRII KESYGTAKQQ HTFTIEILWS KGYKPWPPLH PLLIKGRNLY KDKTMRQPWP  240
DEELRNRVLQ EKHARGFLAR KSRAVRIHEK EIEKMGRLNR MKENKSKEQE NMNRKSSQQV  300
LPQQKVASMN TVPQRSDGRK TPSLQHGEPE NTRQQLISSK QTPTKQLFHY LQQSSYHRHR  360
NEVLPQEGAA RTSRPEFIDD QAPSLQHGEP GNTRQQQISS KPTPTQQTFK YPQQHPNHHH  420
HNEVLPQEGT TRTSKQEFIV QHGGSGNTRQ QQKSSKPSPT QQMFKNPPQP TKHQHHNEVL  480
RQEDAKRTYK VEFIDHQNDT YHATEYDESA FQPRGLFTQH VSHGQHANAD HQLQQPLRPR  540
NQDFRSRDQI YGEDYHDHGQ MTRGQYHPQE RQSQNHYGRR QMTQDRYHPQ QNHHQNYHDR  600
GRMNQNQNHP QQNHHQNYHD SRRMNQNQNH PQQNHHQNYY DHGQMNQNQY PQRFPRLKPC  660
HYYQQGWWCP YGENCKFSHD N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001434G0280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749661e-123AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151517.10.0zinc finger CCCH domain-containing protein 62-like isoform X1
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A368SKH20.0A0A368SKH2_SETIT; Uncharacterized protein
STRINGTraes_5DS_19425E3EE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]