PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001438G0360

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 194aa MW: 21666.4 Da PI: 8.1188

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001438G0360	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	62.9	9.8e-20	15	139	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevl 93 +G+ F+Pt++elv ++L+++++g +l+ ++ e+d + + P +L +++ +++++ y+F+ r++k++ +r ++ g W +t + ++v+ PH01001438G0360 15 AGYGFEPTEDELVLHFLRPQLRGFAPRLAGAVVEADPCGAAPCELLARH-GRRDRGYYFAARSRKKPF---VRRsVAGGGAWMhsSTKNGRSVT 104 699***********************999**********7443.444567999999999885...45547789844566678899 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +++ + fy + ++t Wvm+ey++ PH01001438G0360 105 DLGVVVQWCRLKFCFYVRGEMGQRSTGWVMDEYEI 139 8899999******655555579******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.322	13	165	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-31	15	164	IPR003441	NAC domain
Pfam	PF02365	4.0E-13	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEDEVNLGAE EQDIAGYGFE PTEDELVLHF LRPQLRGFAP RLAGAVVEAD PCGAAPCELL 60 ARHGRRDRGY YFAARSRKKP FVRRSVAGGG AWMHSSTKNG RSVTDLGVVV QWCRLKFCFY 120 VRGEMGQRST GWVMDEYEIT DPRCYRRADD GEEDEYWVLC HVRKSMRTVA TTDSPGGRGA 180 SAQAKARRRE LAA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001438G0360

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071060	1e-75	AK071060.1 Oryza sativa Japonica Group cDNA clone:J023080K20, full insert sequence.
GenBank	AP003687	1e-75	AP003687.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0660F12.
GenBank	AP004073	1e-75	AP004073.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0614D08.
GenBank	AP014957	1e-75	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641921.1	7e-89	NAC domain-containing protein 48-like isoform X1
Refseq	XP_015641928.1	7e-89	NAC domain-containing protein 48-like isoform X2
TrEMBL	A0A0A9C0L5	2e-92	A0A0A9C0L5_ARUDO; Uncharacterized protein
STRING	ORGLA01G0376000.1	1e-90	(Oryza glaberrima)
STRING	OBART01G43720.1	1e-90	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13761	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	5e-12	NAC domain containing protein 47